STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM22983.1Biotin synthetase-like uncharacterized protein. (332 aa)    
Predicted Functional Partners:
AFM22982.1
Biotin synthase-related enzyme; PFAM: Radical SAM superfamily.
   
 0.966
AFM22985.1
Lipoate-protein ligase A; PFAM: Protein of unknown function DUF116; Biotin/lipoate A/B protein ligase family.
 
     0.952
AFM22984.1
TIGRFAM: geranylgeranyl reductase family.
 
     0.924
AFM23467.1
PFAM: Biotin/lipoate A/B protein ligase family.
 
     0.785
AFM22986.1
Dihydrolipoamide dehydrogenase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; TIGRFAM: dihydrolipoamide dehydrogenase.
       0.750
AFM22917.1
Heterodisulfide reductase, subunit C.
 
     0.654
AFM22987.1
PFAM: Outer membrane protein (OmpH-like).
       0.640
AFM22915.1
PFAM: Pyridine nucleotide-disulphide oxidoreductase.
 
     0.576
AFM22918.1
Heterodisulfide reductase, subunit B; PFAM: Cysteine-rich domain.
 
     0.494
AFM22981.1
Hypothetical protein.
       0.488
Your Current Organism:
Desulfomonile tiedjei
NCBI taxonomy Id: 706587
Other names: D. tiedjei DSM 6799, Desulfomonile tiedjei DCB-1, Desulfomonile tiedjei DSM 6799, Desulfomonile tiedjei str. DSM 6799, Desulfomonile tiedjei strain DSM 6799
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