STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM23218.1PFAM: Hemerythrin HHE cation binding domain; TIGRFAM: hemerythrin-like metal-binding domain. (139 aa)    
Predicted Functional Partners:
AFM26920.1
Putative flavoprotein; PFAM: Flavodoxin; Metallo-beta-lactamase superfamily.
  
  
 0.611
AFM27309.1
Putative flavoprotein; PFAM: NADPH-dependent FMN reductase.
  
  
 0.611
AFM27439.1
Chemotaxis signal transduction protein; PFAM: CheW-like domain.
 
    0.453
AFM24238.1
Fe-S oxidoreductase, coproporphyrinogen III oxidase; PFAM: Radical SAM superfamily; HemN C-terminal region.
  
  
 0.412
AFM25725.1
Putative oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
   
  
 0.410
AFM27440.1
PFAM: Cache domain; HAMP domain; Methyl-accepting chemotaxis protein (MCP) signaling domain.
    0.407
Your Current Organism:
Desulfomonile tiedjei
NCBI taxonomy Id: 706587
Other names: D. tiedjei DSM 6799, Desulfomonile tiedjei DCB-1, Desulfomonile tiedjei DSM 6799, Desulfomonile tiedjei str. DSM 6799, Desulfomonile tiedjei strain DSM 6799
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