STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM23494.1Fe-S oxidoreductase; PFAM: Radical SAM superfamily; B12 binding domain. (481 aa)    
Predicted Functional Partners:
AFM24468.1
Fe-S oxidoreductase; PFAM: Radical SAM superfamily.
  
  
  0.917
AFM27665.1
Fe-S oxidoreductase; PFAM: Radical SAM superfamily; B12 binding domain.
  
  
  0.917
AFM23010.1
Fe-S oxidoreductase; PFAM: Radical SAM superfamily; B12 binding domain.
 
  
 
0.755
AFM27346.1
Fe-S oxidoreductase; PFAM: Radical SAM superfamily; B12 binding domain.
  
  
 
0.749
AFM23495.1
TIGRFAM: methyltransferase, FkbM family.
       0.608
AFM26156.1
Putative hydrocarbon binding protein (contains V4R domain); PFAM: V4R domain.
  
  
 0.574
AFM26204.1
Putative hydrocarbon binding protein (contains V4R domain); PFAM: V4R domain.
  
  
 0.574
AFM23946.1
Hypothetical protein.
  
  
 0.549
AFM23496.1
PAS domain-containing protein; PFAM: PAS fold.
       0.509
AFM24392.1
PFAM: Radical SAM superfamily; TIGRFAM: radical SAM additional 4Fe4S-binding domain.
 
  
 0.454
Your Current Organism:
Desulfomonile tiedjei
NCBI taxonomy Id: 706587
Other names: D. tiedjei DSM 6799, Desulfomonile tiedjei DCB-1, Desulfomonile tiedjei DSM 6799, Desulfomonile tiedjei str. DSM 6799, Desulfomonile tiedjei strain DSM 6799
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.