STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM23527.1Transcriptional activator of acetoin/glycerol metabolism; PFAM: Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; PAS fold. (653 aa)    
Predicted Functional Partners:
AFM28117.1
RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.788
AFM23365.1
Monosaccharide ABC transporter ATP-binding protein, CUT2 family; PFAM: ABC transporter.
   
  
 0.514
AFM24825.1
Monosaccharide ABC transporter ATP-binding protein, CUT2 family; PFAM: ABC transporter.
   
  
 0.514
acpS
Holo-(acyl-carrier-protein) synthase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family.
   
    0.450
AFM23910.1
PFAM: Carbon starvation protein CstA.
   
    0.413
AFM27342.1
PFAM: Carbon starvation protein CstA.
   
    0.413
AFM23366.1
Monosaccharide ABC transporter substrate-binding protein, CUT2 family; PFAM: family.
   
    0.400
AFM24826.1
Monosaccharide ABC transporter substrate-binding protein, CUT2 family; PFAM: family; TIGRFAM: TMAO reductase system periplasmic protein TorT.
   
    0.400
Your Current Organism:
Desulfomonile tiedjei
NCBI taxonomy Id: 706587
Other names: D. tiedjei DSM 6799, Desulfomonile tiedjei DCB-1, Desulfomonile tiedjei DSM 6799, Desulfomonile tiedjei str. DSM 6799, Desulfomonile tiedjei strain DSM 6799
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