Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AFM23528.1Hypothetical protein; PFAM: Domain of unknown function (DUF362). (440 aa)    
Predicted Functional Partners:
AFM27399.1
Putative membrane protein; PFAM: Conserved hypothetical protein 698.
  
     0.647
AFM25185.1
PFAM: Cyclic nucleotide-binding domain.
  
     0.618
AFM25340.1
Hypothetical protein; PFAM: Domain of unknown function (DUF362).
  
     0.618
AFM25298.1
PFAM: HEAT repeat; Cyclic nucleotide-binding domain.
  
     0.554
AFM23388.1
ABC-type branched-chain amino acid transport system, periplasmic component.
  
     0.488
AFM25065.1
Hypothetical protein.
  
     0.466
AFM22912.1
PFAM: Glycosyltransferase family 28 C-terminal domain.
  
     0.452
AFM27344.1
Glycosyltransferase; PFAM: Glycosyl transferases group 1.
  
     0.433
AFM25771.1
PFAM: GSCFA family.
 
     0.424
AFM26453.1
Sortase-like acyltransferase.
  
     0.419
Your Current Organism:
Desulfomonile tiedjei
NCBI taxonomy Id: 706587
Other names: D. tiedjei DSM 6799, Desulfomonile tiedjei DCB-1, Desulfomonile tiedjei DSM 6799, Desulfomonile tiedjei str. DSM 6799, Desulfomonile tiedjei strain DSM 6799
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