STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM23539.1Putative calcium-binding protein; PFAM: Hemolysin-type calcium-binding repeat (2 copies). (4316 aa)    
Predicted Functional Partners:
AFM26138.1
PFAM: Peptidase C39 family; ABC transporter transmembrane region; ABC transporter; TIGRFAM: type I secretion system ABC transporter, HlyB family.
 
  
 0.893
AFM28040.1
Outer membrane receptor protein; PFAM: TonB-dependent Receptor Plug Domain.
   
 
 0.847
AFM28041.1
Outer membrane receptor protein; PFAM: TonB-dependent Receptor Plug Domain.
   
 
 0.847
AFM26139.1
PFAM: HlyD family secretion protein; TIGRFAM: type I secretion membrane fusion protein, HlyD family.
 
  
 0.838
AFM24106.1
PFAM: Adenylate and Guanylate cyclase catalytic domain; GAF domain; FHA domain.
 
  
 0.636
AFM27457.1
PFAM: Competence protein; TIGRFAM: ComEC/Rec2-related protein; DNA internalization-related competence protein ComEC/Rec2.
  
  
 0.606
AFM25480.1
ABC-type bacteriocin/lantibiotic exporter with N-terminal double-glycine peptidase domain; PFAM: ABC transporter transmembrane region; ABC transporter.
  
  
 0.586
AFM26300.1
Membrane-fusion protein; PFAM: Peptidase family M50.
 
   
 0.570
AFM23793.1
Membrane-fusion protein; PFAM: Peptidase family M50.
 
   
 0.565
AFM23830.1
PFAM: Outer membrane efflux protein.
  
  
 0.554
Your Current Organism:
Desulfomonile tiedjei
NCBI taxonomy Id: 706587
Other names: D. tiedjei DSM 6799, Desulfomonile tiedjei DCB-1, Desulfomonile tiedjei DSM 6799, Desulfomonile tiedjei str. DSM 6799, Desulfomonile tiedjei strain DSM 6799
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.