STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM23957.1Hypothetical protein; PFAM: Rubrerythrin. (177 aa)    
Predicted Functional Partners:
AFM23958.1
Ferritin-like protein; Iron-storage protein.
  
  
 0.633
AFM23971.1
Isopropylmalate/homocitrate/citramalate synthase; PFAM: Cache domain; HMGL-like.
 
    0.581
pyrD
Dihydroorotate dehydrogenase family protein; Catalyzes the conversion of dihydroorotate to orotate.
   
 
 0.576
AFM25118.1
2-polyprenylphenol hydroxylase-like oxidoreductase; PFAM: Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; Oxidoreductase NAD-binding domain.
   
 
 0.564
AFM26913.1
PFAM: Redoxin.
 
   
 0.508
AFM24581.1
PFAM: Aldo/keto reductase family.
   
   0.468
AFM27661.1
PFAM: Aldo/keto reductase family.
   
   0.468
AFM28115.1
PFAM: OstA-like protein.
  
     0.463
AFM22920.1
Radical SAM additional 4Fe4S-binding domain protein; PFAM: Radical SAM superfamily; TIGRFAM: peptide-modifying radical SAM enzyme CbpB; radical SAM additional 4Fe4S-binding domain.
 
     0.455
AFM22903.1
Hypothetical protein; PFAM: Uncharacterised ACR, YkgG family COG1556.
   
   0.435
Your Current Organism:
Desulfomonile tiedjei
NCBI taxonomy Id: 706587
Other names: D. tiedjei DSM 6799, Desulfomonile tiedjei DCB-1, Desulfomonile tiedjei DSM 6799, Desulfomonile tiedjei str. DSM 6799, Desulfomonile tiedjei strain DSM 6799
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.