STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM24277.1PFAM: Domain of Unknown Function (DUF350). (74 aa)    
Predicted Functional Partners:
speE
Putative spermidine synthase with an N-terminal membrane domain; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
 
     0.945
AFM24281.1
Hypothetical protein.
 
     0.872
AFM25038.1
Putative virion core protein (lumpy skin disease virus); PFAM: SPFH domain / Band 7 family.
 
     0.700
AFM22869.1
Large extracellular alpha-helical protein; PFAM: Alpha-macro-globulin thiol-ester bond-forming region; Alpha-2-macroglobulin family; MG2 domain; Alpha-2-macroglobulin family N-terminal region.
 
     0.570
AFM25138.1
V8-like Glu-specific endopeptidase; PFAM: Trypsin.
  
     0.519
AFM25367.1
PFAM: Protein of unknown function DUF262.
  
     0.485
Your Current Organism:
Desulfomonile tiedjei
NCBI taxonomy Id: 706587
Other names: D. tiedjei DSM 6799, Desulfomonile tiedjei DCB-1, Desulfomonile tiedjei DSM 6799, Desulfomonile tiedjei str. DSM 6799, Desulfomonile tiedjei strain DSM 6799
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.