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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM24686.1PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, 4TM/12TM fusion protein. (632 aa)    
Predicted Functional Partners:
AFM24688.1
TIGRFAM: TRAP transporter solute receptor, TAXI family.
    0.960
AFM23546.1
PFAM: NMT1/THI5 like; TIGRFAM: TRAP transporter solute receptor, TAXI family.
    0.897
AFM25449.1
PFAM: NMT1/THI5 like; TIGRFAM: TRAP transporter solute receptor, TAXI family.
    0.869
AFM27650.1
TIGRFAM: TRAP transporter solute receptor, TAXI family.
    0.861
AFM24687.1
PFAM: Domain of unknown function (DUF1850).
  
    0.781
AFM26796.1
TIGRFAM: TRAP transporter solute receptor, TAXI family.
 
    0.654
Your Current Organism:
Desulfomonile tiedjei
NCBI taxonomy Id: 706587
Other names: D. tiedjei DSM 6799, Desulfomonile tiedjei DCB-1, Desulfomonile tiedjei DSM 6799, Desulfomonile tiedjei str. DSM 6799, Desulfomonile tiedjei strain DSM 6799
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