Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AFM24686.1PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, 4TM/12TM fusion protein. (632 aa)    
Predicted Functional Partners:
AFM24688.1
TIGRFAM: TRAP transporter solute receptor, TAXI family.
  
 0.961
AFM23546.1
PFAM: NMT1/THI5 like; TIGRFAM: TRAP transporter solute receptor, TAXI family.
  
 0.899
AFM25449.1
PFAM: NMT1/THI5 like; TIGRFAM: TRAP transporter solute receptor, TAXI family.
  
 0.871
AFM27650.1
TIGRFAM: TRAP transporter solute receptor, TAXI family.
 
  
 0.864
AFM24687.1
PFAM: Domain of unknown function (DUF1850).
  
    0.793
AFM26796.1
TIGRFAM: TRAP transporter solute receptor, TAXI family.
 
  
 0.656
Your Current Organism:
Desulfomonile tiedjei
NCBI taxonomy Id: 706587
Other names: D. tiedjei DSM 6799, Desulfomonile tiedjei DCB-1, Desulfomonile tiedjei DSM 6799, Desulfomonile tiedjei str. DSM 6799, Desulfomonile tiedjei strain DSM 6799
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