Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AFM24710.1Putative transcriptional regulator; PFAM: Cupin domain; Helix-turn-helix. (180 aa)    
Predicted Functional Partners:
AFM24708.1
Aromatic ring hydroxylase; PFAM: 4-hydroxyphenylacetate 3-hydroxylase N terminal; 4-hydroxyphenylacetate 3-hydroxylase C terminal.
       0.625
AFM24709.1
Hypothetical protein.
       0.625
AFM24707.1
acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; PFAM: AMP-binding enzyme.
  
    0.548
AFM25892.1
Putative transcriptional regulator; PFAM: Cupin domain; Helix-turn-helix.
 
  
 0.538
AFM27782.1
Hypothetical protein; PFAM: Zeta toxin.
  
 
 0.520
AFM24665.1
PFAM: Permease family.
 
   
 0.478
AFM27944.1
PFAM: Bacterial regulatory proteins, gntR family; FCD domain.
  
  
 0.437
AFM25764.1
Putative transcriptional regulator with cupin domain; PFAM: Cupin domain.
 
  
0.423
AFM24763.1
Putative transcriptional regulator with cupin domain; PFAM: Cupin domain.
 
  
0.418
AFM26841.1
Putative transcriptional regulator; PFAM: Cupin domain; Helix-turn-helix.
 
  
0.415
Your Current Organism:
Desulfomonile tiedjei
NCBI taxonomy Id: 706587
Other names: D. tiedjei DSM 6799, Desulfomonile tiedjei DCB-1, Desulfomonile tiedjei DSM 6799, Desulfomonile tiedjei str. DSM 6799, Desulfomonile tiedjei strain DSM 6799
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