STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM24814.1Hypothetical protein. (1707 aa)    
Predicted Functional Partners:
AFM27884.1
PFAM: Pilus assembly protein, PilO.
 
  
 0.798
AFM26664.1
PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain.
 
  
 0.795
AFM24815.1
Hypothetical protein.
       0.773
AFM25806.1
TIGRFAM: prepilin-type N-terminal cleavage/methylation domain.
  
  
 0.763
AFM27882.1
PFAM: Competence protein A; TIGRFAM: type IV pilus assembly protein PilM.
 
  
 0.690
AFM27883.1
PFAM: Fimbrial assembly protein (PilN).
 
  
 0.626
AFM27254.1
Hypothetical protein.
  
     0.573
AFM23807.1
Type II secretory pathway, component HofQ; PFAM: Localisation of periplasmic protein complexes; Bacterial type II and III secretion system protein; Belongs to the bacterial secretin family.
 
   
 0.499
AFM25323.1
Transglutaminase-like enzyme, predicted cysteine protease; PFAM: Transglutaminase-like superfamily; Domain of unknown function (DUF3488).
  
     0.488
Your Current Organism:
Desulfomonile tiedjei
NCBI taxonomy Id: 706587
Other names: D. tiedjei DSM 6799, Desulfomonile tiedjei DCB-1, Desulfomonile tiedjei DSM 6799, Desulfomonile tiedjei str. DSM 6799, Desulfomonile tiedjei strain DSM 6799
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.