STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM24886.1Site-specific recombinase, DNA invertase Pin; PFAM: Recombinase; Resolvase, N terminal domain. (244 aa)    
Predicted Functional Partners:
AFM24887.1
Hypothetical protein.
       0.580
AFM23738.1
Hypothetical protein; PFAM: Nucleoside recognition.
   
    0.517
AFM24992.1
PFAM: D5 N terminal like; Poxvirus D5 protein-like; TIGRFAM: phage/plasmid primase, P4 family, C-terminal domain.
 
  
 0.508
AFM27603.1
Hypothetical protein.
  
    0.476
AFM23713.1
Phage/plasmid primase, P4 family, C-terminal domain protein; PFAM: CHC2 zinc finger; D5 N terminal like; Poxvirus D5 protein-like; DNA primase catalytic core, N-terminal domain; TIGRFAM: DNA primase, catalytic core; phage/plasmid primase, P4 family, C-terminal domain.
 
  
 0.459
AFM27717.1
Site-specific recombinase XerD; PFAM: Phage integrase family; Belongs to the 'phage' integrase family.
 
  
 0.428
AFM26122.1
DNA/RNA helicase, superfamily II; PFAM: Type III restriction enzyme, res subunit.
 
  
 0.419
AFM26025.1
PFAM: D5 N terminal like; TIGRFAM: phage/plasmid primase, P4 family, C-terminal domain.
 
  
 0.409
Your Current Organism:
Desulfomonile tiedjei
NCBI taxonomy Id: 706587
Other names: D. tiedjei DSM 6799, Desulfomonile tiedjei DCB-1, Desulfomonile tiedjei DSM 6799, Desulfomonile tiedjei str. DSM 6799, Desulfomonile tiedjei strain DSM 6799
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.