STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM25002.1Formate dehydrogenase, alpha subunit; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; Molybdopterin oxidoreductase Fe4S4 domain; TIGRFAM: formate dehydrogenase, alpha subunit, proteobacterial-type; Contains selenocysteine; manually curated; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (1010 aa)    
Predicted Functional Partners:
AFM25001.1
Fe-S-cluster-containing hydrogenase subunit.
 0.998
AFM24512.1
TIGRFAM: formate dehydrogenase, beta subunit, Fe-S containing.
 0.993
AFM27918.1
Fe-S-cluster-containing hydrogenase subunit; PFAM: 4Fe-4S binding domain; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence.
 0.988
AFM25000.1
Uncharacterized protein involved in formate dehydrogenase formation; Necessary for formate dehydrogenase activity. Belongs to the FdhE family.
 
 
 
 0.950
AFM25600.1
Putative anaerobic dehydrogenase; PFAM: Molybdopterin oxidoreductase; NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; Molydopterin dinucleotide binding domain; 4Fe-4S binding domain; Molybdopterin oxidoreductase Fe4S4 domain.
 
 
0.923
AFM23586.1
NADPH-dependent glutamate synthase beta chain-like oxidoreductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase.
 
 
 0.922
AFM24902.1
PFAM: Prokaryotic dksA/traR C4-type zinc finger; FmdE, Molybdenum formylmethanofuran dehydrogenase operon.
  
 
 0.918
AFM25599.1
NADPH-dependent glutamate synthase beta chain-like oxidoreductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; NADH-ubiquinone oxidoreductase-F iron-sulfur binding region.
   
 0.918
AFM22978.1
PFAM: Prismane/CO dehydrogenase family; CO dehydrogenase/acetyl-CoA synthase delta subunit; TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit.
     
 0.912
AFM26900.1
Hypothetical protein.
     
 0.903
Your Current Organism:
Desulfomonile tiedjei
NCBI taxonomy Id: 706587
Other names: D. tiedjei DSM 6799, Desulfomonile tiedjei DCB-1, Desulfomonile tiedjei DSM 6799, Desulfomonile tiedjei str. DSM 6799, Desulfomonile tiedjei strain DSM 6799
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.