STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM25060.1PFAM: Radical SAM superfamily; TIGRFAM: glycyl-radical enzyme activating protein family. (308 aa)    
Predicted Functional Partners:
AFM24839.1
Pyruvate-formate lyase; PFAM: Glycine radical; Pyruvate formate lyase; TIGRFAM: pyruvate formate-lyase.
  
 0.932
AFM25062.1
Pyruvate-formate lyase; PFAM: Glycine radical; Pyruvate formate lyase; TIGRFAM: pyruvate formate-lyase.
  
 0.926
AFM24701.1
Alcohol dehydrogenase, class IV; PFAM: Iron-containing alcohol dehydrogenase.
 
  
 0.609
AFM25598.1
Alcohol dehydrogenase, class IV; PFAM: Iron-containing alcohol dehydrogenase.
 
  
 0.607
AFM25655.1
Fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
  
  
 0.555
AFM23975.1
NAD(FAD)-dependent dehydrogenase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Rieske [2Fe-2S] domain.
  
  
 0.486
AFM27792.1
NAD(P)H-nitrite reductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain.
  
  
 0.468
AFM26404.1
NAD(P)H-nitrite reductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase.
  
  
 0.453
AFM23159.1
Ferredoxin subunit of nitrite reductase and ring-hydroxylating dioxygenase; PFAM: Rieske [2Fe-2S] domain.
  
  
 0.426
Your Current Organism:
Desulfomonile tiedjei
NCBI taxonomy Id: 706587
Other names: D. tiedjei DSM 6799, Desulfomonile tiedjei DCB-1, Desulfomonile tiedjei DSM 6799, Desulfomonile tiedjei str. DSM 6799, Desulfomonile tiedjei strain DSM 6799
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.