STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM25070.1PFAM: Glycosyl hydrolase catalytic core. (311 aa)    
Predicted Functional Partners:
AFM25071.1
PFAM: Protein of unknown function (DUF1698).
 
     0.931
AFM25072.1
Hypothetical protein.
 
     0.886
AFM25074.1
PFAM: NAD dependent epimerase/dehydratase family.
     0.853
AFM25073.1
Fe-S oxidoreductase; PFAM: Radical SAM superfamily; B12 binding domain.
 
     0.845
AFM23128.1
Glycosyltransferase; PFAM: Glycosyl transferases group 1.
 
  
 0.811
AFM23129.1
Hypothetical protein; PFAM: Glycosyl transferases group 1.
 
     0.802
AFM23130.1
Hypothetical protein.
 
     0.795
AFM25076.1
Hypothetical protein.
 
     0.795
AFM24397.1
PFAM: Protein of unknown function (DUF1698).
 
     0.794
AFM27234.1
Putative LmbE-like protein; PFAM: GlcNAc-PI de-N-acetylase.
 
     0.793
Your Current Organism:
Desulfomonile tiedjei
NCBI taxonomy Id: 706587
Other names: D. tiedjei DSM 6799, Desulfomonile tiedjei DCB-1, Desulfomonile tiedjei DSM 6799, Desulfomonile tiedjei str. DSM 6799, Desulfomonile tiedjei strain DSM 6799
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.