STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM25324.1PFAM: Protein of unknown function DUF58. (358 aa)    
Predicted Functional Partners:
AFM25323.1
Transglutaminase-like enzyme, predicted cysteine protease; PFAM: Transglutaminase-like superfamily; Domain of unknown function (DUF3488).
 
  
 0.972
AFM25325.1
PFAM: ATPase family associated with various cellular activities (AAA).
 
  
 0.950
AFM24335.1
WD40 repeat-containing protein; PFAM: Protein kinase domain; WD domain, G-beta repeat.
 
  
 0.519
AFM27623.1
Putative membrane protein/domain protein; PFAM: RDD family.
 
    0.509
AFM23048.1
PFAM: von Willebrand factor type A domain.
 
     0.501
AFM25204.1
ATPase family protein associated with various cellular activities (AAA); PFAM: AAA domain (dynein-related subfamily).
 
  
 0.501
AFM26458.1
PFAM: Tetratricopeptide repeat.
  
  
 0.493
AFM25326.1
Hypothetical protein.
       0.489
AFM27884.1
PFAM: Pilus assembly protein, PilO.
 
     0.426
AFM22769.1
PFAM: Magnesium chelatase, subunit ChlI; von Willebrand factor type A domain; manually curated.
  
  
 0.415
Your Current Organism:
Desulfomonile tiedjei
NCBI taxonomy Id: 706587
Other names: D. tiedjei DSM 6799, Desulfomonile tiedjei DCB-1, Desulfomonile tiedjei DSM 6799, Desulfomonile tiedjei str. DSM 6799, Desulfomonile tiedjei strain DSM 6799
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.