STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM25453.1Hypothetical protein. (155 aa)    
Predicted Functional Partners:
AFM25550.1
Hypothetical protein.
  
     0.764
AFM23309.1
Hypothetical protein.
  
     0.707
AFM24111.1
Hypothetical protein.
  
     0.707
AFM23308.1
PFAM: Putative exonuclease, RdgC.
  
     0.602
AFM23042.1
Hypothetical protein.
  
     0.546
rpoD
RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
  
     0.529
AFM27726.1
PFAM: Radical SAM superfamily; TIGRFAM: His-Xaa-Ser system radical SAM maturase HsxB.
  
     0.514
AFM27679.1
Hypothetical protein; PFAM: Yip1 domain.
  
     0.481
AFM23305.1
Sec-independent protein secretion pathway component; PFAM: mttA/Hcf106 family; manually curated.
  
     0.459
AFM26462.1
PFAM: Domain of unknown function (DUF1844).
  
     0.455
Your Current Organism:
Desulfomonile tiedjei
NCBI taxonomy Id: 706587
Other names: D. tiedjei DSM 6799, Desulfomonile tiedjei DCB-1, Desulfomonile tiedjei DSM 6799, Desulfomonile tiedjei str. DSM 6799, Desulfomonile tiedjei strain DSM 6799
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.