STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM25484.1Putative xylanase/chitin deacetylase; PFAM: Domain of unknown function (DUF3473); Polysaccharide deacetylase; TIGRFAM: polysaccharide deacetylase family protein, PEP-CTERM locus subfamily. (300 aa)    
Predicted Functional Partners:
AFM25486.1
methionyl-tRNA formyltransferase; PFAM: Formyl transferase.
  
  
 0.836
AFM25485.1
Glycosyltransferase; PFAM: Glycosyl transferases group 1.
 
  
 0.828
AFM25489.1
Putative glycosyltransferase; PFAM: Glycosyl transferase family 2.
 
  
 0.806
AFM25482.1
Glycosyl transferase possibly involved in lipopolysaccharide synthesis; PFAM: Bacterial sugar transferase.
     
 0.785
AFM25483.1
Methylase involved in ubiquinone/menaquinone biosynthesis.
       0.775
AFM25487.1
PFAM: Polysaccharide deacetylase.
       0.727
AFM25488.1
Hypothetical protein.
       0.727
AFM25490.1
Hypothetical protein.
       0.727
AFM23660.1
Glycosyltransferase; PFAM: Glycosyl transferases group 1; TIGRFAM: PEP-CTERM/exosortase A-associated glycosyltransferase, Daro_2409 family.
 
  
 0.720
AFM25481.1
PFAM: Asparagine synthase; TIGRFAM: asparagine synthase (glutamine-hydrolyzing).
 
  
 0.669
Your Current Organism:
Desulfomonile tiedjei
NCBI taxonomy Id: 706587
Other names: D. tiedjei DSM 6799, Desulfomonile tiedjei DCB-1, Desulfomonile tiedjei DSM 6799, Desulfomonile tiedjei str. DSM 6799, Desulfomonile tiedjei strain DSM 6799
Server load: low (8%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.