STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM25533.1PFAM: ABC-2 type transporter; TIGRFAM: daunorubicin resistance ABC transporter membrane protein. (249 aa)    
Predicted Functional Partners:
AFM25534.1
PFAM: ABC transporter; TIGRFAM: daunorubicin resistance ABC transporter ATP-binding subunit.
  
 0.974
AFM24591.1
ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter.
  
 0.876
AFM28049.1
ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter.
  
 0.876
AFM25535.1
Ribosomal protein S1; PFAM: S1 RNA binding domain; TIGRFAM: ribosomal protein S1.
       0.773
AFM27829.1
ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter.
  
 0.688
AFM27830.1
ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter.
  
 0.681
AFM25532.1
Hypothetical protein; PFAM: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C).
       0.678
AFM27248.1
ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter.
  
 0.587
AFM27493.1
Putative metal-dependent membrane protease; PFAM: CAAX amino terminal protease family.
  
  
 0.573
AFM24222.1
Polyketide synthase family protein; PFAM: Acyl transferase domain; Phosphopantetheine attachment site; KR domain; 4'-phosphopantetheinyl transferase superfamily; 2-nitropropane dioxygenase; Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain; TIGRFAM: phosphopantetheine--protein transferase domain.
  
  
 0.568
Your Current Organism:
Desulfomonile tiedjei
NCBI taxonomy Id: 706587
Other names: D. tiedjei DSM 6799, Desulfomonile tiedjei DCB-1, Desulfomonile tiedjei DSM 6799, Desulfomonile tiedjei str. DSM 6799, Desulfomonile tiedjei strain DSM 6799
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.