STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM25821.1Hypothetical protein. (471 aa)    
Predicted Functional Partners:
AFM25822.1
ABC-type transport system involved in resistance to organic solvents, periplasmic component; PFAM: mce related protein; TIGRFAM: virulence factor Mce family protein.
     
 0.816
truA
Pseudouridylate synthase I; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.650
AFM28026.1
DNA-directed RNA polymerase specialized sigma subunit, sigma24; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
   
 
 0.583
AFM23202.1
Hypothetical protein.
    
 
 0.580
AFM23665.1
TIGRFAM: parallel beta-helix repeat (two copies).
    
 
 0.580
AFM23770.1
PFAM: Putative Ig domain.
    
 
 0.580
AFM24410.1
Hypothetical protein.
    
 
 0.580
AFM24499.1
PFAM: FG-GAP repeat.
    
 
 0.580
AFM24648.1
VCBS repeat-containing protein; TIGRFAM: VCBS repeat.
    
 
 0.580
AFM25672.1
Hypothetical protein.
    
 
 0.580
Your Current Organism:
Desulfomonile tiedjei
NCBI taxonomy Id: 706587
Other names: D. tiedjei DSM 6799, Desulfomonile tiedjei DCB-1, Desulfomonile tiedjei DSM 6799, Desulfomonile tiedjei str. DSM 6799, Desulfomonile tiedjei strain DSM 6799
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.