STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM25887.1Anaerobic dehydrogenase, typically selenocysteine-containing; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; Molybdopterin oxidoreductase Fe4S4 domain; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (737 aa)    
Predicted Functional Partners:
AFM23683.1
TIGRFAM: nitrate reductase, beta subunit.
   
 0.954
AFM26772.1
Hypothetical protein.
  
 0.951
AFM26915.1
Hypothetical protein.
  
 0.951
AFM27218.1
nitrate/TMAO reductase, membrane-bound tetraheme cytochrome c subunit; PFAM: NapC/NirT cytochrome c family, N-terminal region.
  
 0.951
napA
Anaerobic dehydrogenase, typically selenocysteine-containing; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite.
  
  
 
0.930
AFM22942.1
PFAM: ABC transporter; TIGRFAM: nitrate transport ATP-binding subunits C and D.
 
  
 0.922
AFM22944.1
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component.
 
  
 0.921
AFM23682.1
Respiratory nitrate reductase, alpha subunit; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; TIGRFAM: respiratory nitrate reductase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.915
AFM23685.1
PFAM: Nitrate reductase gamma subunit; TIGRFAM: respiratory nitrate reductase, gamma subunit.
    
 0.911
AFM25352.1
PFAM: Nitrate reductase gamma subunit.
    
 0.911
Your Current Organism:
Desulfomonile tiedjei
NCBI taxonomy Id: 706587
Other names: D. tiedjei DSM 6799, Desulfomonile tiedjei DCB-1, Desulfomonile tiedjei DSM 6799, Desulfomonile tiedjei str. DSM 6799, Desulfomonile tiedjei strain DSM 6799
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