STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM25892.1Putative transcriptional regulator; PFAM: Cupin domain; Helix-turn-helix. (172 aa)    
Predicted Functional Partners:
AFM25474.1
PFAM: Phage derived protein Gp49-like (DUF891).
  
 
 0.943
AFM28191.1
Cystathionine beta-lyase/cystathionine gamma-synthase; PFAM: Cys/Met metabolism PLP-dependent enzyme.
 
  
 0.736
AFM24222.1
Polyketide synthase family protein; PFAM: Acyl transferase domain; Phosphopantetheine attachment site; KR domain; 4'-phosphopantetheinyl transferase superfamily; 2-nitropropane dioxygenase; Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain; TIGRFAM: phosphopantetheine--protein transferase domain.
  
 
 0.674
AFM23144.1
Putative transcriptional regulator; PFAM: Cupin domain; Helix-turn-helix.
 
 
 0.638
AFM23816.1
Transcriptional regulator; PFAM: MarR family.
 
  
 0.630
AFM27393.1
PFAM: Bacterial regulatory proteins, gntR family; UTRA domain.
 
  
 0.619
AFM27011.1
PFAM: Bacterial regulatory proteins, gntR family; UTRA domain.
  
  
 0.563
AFM22999.1
DNA-binding domain-containing protein, AraC-type.
 
 
 0.556
AFM25859.1
Putative acetyltransferase, GNAT superfamily; PFAM: Acetyltransferase (GNAT) family.
  
     0.552
AFM25952.1
Polyketide synthase family protein; PFAM: Phosphopantetheine attachment site; Acyl transferase domain; KR domain; 2-nitropropane dioxygenase; Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain; TIGRFAM: malonyl CoA-acyl carrier protein transacylase.
  
 
 0.546
Your Current Organism:
Desulfomonile tiedjei
NCBI taxonomy Id: 706587
Other names: D. tiedjei DSM 6799, Desulfomonile tiedjei DCB-1, Desulfomonile tiedjei DSM 6799, Desulfomonile tiedjei str. DSM 6799, Desulfomonile tiedjei strain DSM 6799
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.