STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM25954.1Fe-S oxidoreductase; PFAM: Radical SAM superfamily; B12 binding domain. (521 aa)    
Predicted Functional Partners:
AFM26959.1
Fe-S oxidoreductase; PFAM: Radical SAM superfamily; B12 binding domain.
 
     0.767
AFM25952.1
Polyketide synthase family protein; PFAM: Phosphopantetheine attachment site; Acyl transferase domain; KR domain; 2-nitropropane dioxygenase; Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain; TIGRFAM: malonyl CoA-acyl carrier protein transacylase.
  
    0.752
AFM25073.1
Fe-S oxidoreductase; PFAM: Radical SAM superfamily; B12 binding domain.
  
     0.745
AFM25953.1
PFAM: 4'-phosphopantetheinyl transferase superfamily; Belongs to the P-Pant transferase superfamily.
       0.709
AFM26156.1
Putative hydrocarbon binding protein (contains V4R domain); PFAM: V4R domain.
  
  
 0.574
AFM26204.1
Putative hydrocarbon binding protein (contains V4R domain); PFAM: V4R domain.
  
  
 0.574
AFM23946.1
Hypothetical protein.
  
  
 0.549
AFM26395.1
Fe-S oxidoreductase; PFAM: Radical SAM superfamily; B12 binding domain.
 
     0.507
AFM25955.1
Bacterial nucleoid DNA-binding protein; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.
       0.503
AFM25362.1
Putative Fe-S oxidoreductase; PFAM: Radical SAM superfamily; manually curated.
 
  
 0.493
Your Current Organism:
Desulfomonile tiedjei
NCBI taxonomy Id: 706587
Other names: D. tiedjei DSM 6799, Desulfomonile tiedjei DCB-1, Desulfomonile tiedjei DSM 6799, Desulfomonile tiedjei str. DSM 6799, Desulfomonile tiedjei strain DSM 6799
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.