STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM26015.1ABC-type Fe3+-hydroxamate transport system, periplasmic component; PFAM: Periplasmic binding protein; Adenosylcobinamide amidohydrolase. (686 aa)    
Predicted Functional Partners:
AFM28051.1
ABC-type Fe3+-siderophore transport system, permease component; PFAM: FecCD transport family; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.957
AFM24905.1
ABC-type Fe3+-siderophore transport system, permease component; PFAM: FecCD transport family; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.932
AFM28050.1
ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component; PFAM: ABC transporter.
 
 
 0.920
AFM26017.1
Biopolymer transport protein; PFAM: MotA/TolQ/ExbB proton channel family.
 
  
 0.914
AFM26016.1
PFAM: Uncharacterized conserved protein (DUF2149).
 
    0.897
AFM26014.1
Mg chelatase, cobalamin biosynthesis protein CobN; PFAM: CobN/Magnesium Chelatase.
 
  
 0.874
AFM24906.1
ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component; PFAM: ABC transporter.
 
 
 0.865
AFM27762.1
TIGRFAM: putative iron-only hydrogenase system regulator.
  
 
 0.835
AFM26018.1
PFAM: Predicted transporter (DUF2162).
       0.792
cobQ
Adenosylcobyric acid synthase (glutamine-hydrolysing), L-threonine O-3-phosphate decarboxylase; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
  
  
 0.744
Your Current Organism:
Desulfomonile tiedjei
NCBI taxonomy Id: 706587
Other names: D. tiedjei DSM 6799, Desulfomonile tiedjei DCB-1, Desulfomonile tiedjei DSM 6799, Desulfomonile tiedjei str. DSM 6799, Desulfomonile tiedjei strain DSM 6799
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