STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM26019.1TonB family protein; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain. (406 aa)    
Predicted Functional Partners:
AFM28040.1
Outer membrane receptor protein; PFAM: TonB-dependent Receptor Plug Domain.
  
 
 0.951
AFM28041.1
Outer membrane receptor protein; PFAM: TonB-dependent Receptor Plug Domain.
  
 
 0.951
AFM22835.1
PFAM: Biopolymer transport protein ExbD/TolR; TIGRFAM: TolR protein.
  
 
 0.934
AFM23448.1
PFAM: Biopolymer transport protein ExbD/TolR.
  
 
 0.934
AFM28055.1
PFAM: Biopolymer transport protein ExbD/TolR.
  
 
 0.934
AFM26017.1
Biopolymer transport protein; PFAM: MotA/TolQ/ExbB proton channel family.
  
 
 0.905
AFM22836.1
Cell division and transport-associated protein TolQ; PFAM: MotA/TolQ/ExbB proton channel family; TIGRFAM: TolQ protein; TC 2.C.1.2.1.
  
 
 0.884
AFM23449.1
Biopolymer transport protein; PFAM: MotA/TolQ/ExbB proton channel family.
  
 
 0.884
tolB
Tol-pal system beta propeller repeat protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 0.837
AFM27751.1
Outer membrane receptor for ferrienterochelin and colicins; PFAM: TonB-dependent Receptor Plug Domain.
 
 
 0.722
Your Current Organism:
Desulfomonile tiedjei
NCBI taxonomy Id: 706587
Other names: D. tiedjei DSM 6799, Desulfomonile tiedjei DCB-1, Desulfomonile tiedjei DSM 6799, Desulfomonile tiedjei str. DSM 6799, Desulfomonile tiedjei strain DSM 6799
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.