STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM26025.1PFAM: D5 N terminal like; TIGRFAM: phage/plasmid primase, P4 family, C-terminal domain. (618 aa)    
Predicted Functional Partners:
AFM26024.1
PFAM: Bifunctional DNA primase/polymerase, N-terminal.
     0.903
AFM24888.1
Bifunctional DNA primase/polymerase famiily protein,HTH domain-containing protein; PFAM: HTH domain; Bifunctional DNA primase/polymerase, N-terminal.
     0.533
AFM27818.1
Site-specific recombinase, DNA invertase Pin; PFAM: Resolvase, N terminal domain.
 
  
 0.498
AFM26027.1
Site-specific recombinase, DNA invertase Pin; PFAM: Resolvase, N terminal domain.
 
  
 0.492
AFM24989.1
Site-specific recombinase, DNA invertase Pin; PFAM: Recombinase; Resolvase, N terminal domain.
 
  
 0.467
AFM26023.1
PFAM: Helix-turn-helix.
       0.439
AFM24886.1
Site-specific recombinase, DNA invertase Pin; PFAM: Recombinase; Resolvase, N terminal domain.
 
  
 0.409
AFM23720.1
Site-specific recombinase, DNA invertase Pin; PFAM: Recombinase; Resolvase, N terminal domain.
 
  
 0.400
Your Current Organism:
Desulfomonile tiedjei
NCBI taxonomy Id: 706587
Other names: D. tiedjei DSM 6799, Desulfomonile tiedjei DCB-1, Desulfomonile tiedjei DSM 6799, Desulfomonile tiedjei str. DSM 6799, Desulfomonile tiedjei strain DSM 6799
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.