STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM27111.1PFAM: Predicted membrane protein (DUF2318). (155 aa)    
Predicted Functional Partners:
AFM27110.1
ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease.
 
  
 0.963
AFM27109.1
ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter.
 
    0.848
AFM27112.1
Copper chaperone; PFAM: Heavy-metal-associated domain.
       0.707
AFM27108.1
Hypothetical protein.
       0.617
AFM23739.1
PFAM: CO dehydrogenase/acetyl-CoA synthase delta subunit.
  
     0.529
AFM23395.1
ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease.
 
  
 0.462
AFM27113.1
Hypothetical protein.
       0.446
Your Current Organism:
Desulfomonile tiedjei
NCBI taxonomy Id: 706587
Other names: D. tiedjei DSM 6799, Desulfomonile tiedjei DCB-1, Desulfomonile tiedjei DSM 6799, Desulfomonile tiedjei str. DSM 6799, Desulfomonile tiedjei strain DSM 6799
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.