STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM27140.1PFAM: NHL repeat. (303 aa)    
Predicted Functional Partners:
AFM27139.1
Hypothetical protein.
       0.547
AFM24106.1
PFAM: Adenylate and Guanylate cyclase catalytic domain; GAF domain; FHA domain.
 
     0.520
AFM24248.1
Hypothetical protein; PFAM: Formylglycine-generating sulfatase enzyme.
 
     0.499
AFM27141.1
Hypothetical protein.
       0.492
AFM25793.1
PFAM: Tetratricopeptide repeat.
  
     0.488
AFM27482.1
DNA polymerase III, delta prime subunit; PFAM: ATPase family associated with various cellular activities (AAA); TIGRFAM: DNA polymerase III, delta' subunit.
  
     0.471
AFM25648.1
Hypothetical protein.
  
     0.469
AFM27142.1
Hypothetical protein.
       0.450
AFM23201.1
Hypothetical protein; PFAM: Formylglycine-generating sulfatase enzyme.
 
     0.445
AFM24343.1
PFAM: Adenylate and Guanylate cyclase catalytic domain; HAMP domain.
 
     0.425
Your Current Organism:
Desulfomonile tiedjei
NCBI taxonomy Id: 706587
Other names: D. tiedjei DSM 6799, Desulfomonile tiedjei DCB-1, Desulfomonile tiedjei DSM 6799, Desulfomonile tiedjei str. DSM 6799, Desulfomonile tiedjei strain DSM 6799
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.