STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM27207.1poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit; PFAM: Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus; alpha/beta hydrolase fold; TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. (359 aa)    
Predicted Functional Partners:
AFM27206.1
PFAM: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E); TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit.
 
  
 0.993
AFM27209.1
Acyl dehydratase; PFAM: MaoC like domain.
 
 
 0.953
AFM22849.1
Poly(3-hydroxyalkanoate) synthetase; PFAM: Protein of unknown function (DUF3141).
  
  
 
0.928
AFM28003.1
Acyl dehydratase; PFAM: MaoC like domain.
 
 
 0.928
AFM24289.1
PFAM: Enoyl-CoA hydratase/isomerase family; 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain.
   
 
 0.913
AFM27208.1
GAF domain-containing protein; PFAM: GAF domain.
 
    0.741
AFM26302.1
Hypothetical protein.
  
     0.509
AFM25213.1
Phosphotransacetylase; PFAM: Phosphate acetyl/butaryl transferase.
  
  
 0.402
Your Current Organism:
Desulfomonile tiedjei
NCBI taxonomy Id: 706587
Other names: D. tiedjei DSM 6799, Desulfomonile tiedjei DCB-1, Desulfomonile tiedjei DSM 6799, Desulfomonile tiedjei str. DSM 6799, Desulfomonile tiedjei strain DSM 6799
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.