STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM27254.1Hypothetical protein. (362 aa)    
Predicted Functional Partners:
AFM27882.1
PFAM: Competence protein A; TIGRFAM: type IV pilus assembly protein PilM.
 
 
   0.948
AFM27884.1
PFAM: Pilus assembly protein, PilO.
 
 
   0.948
AFM27883.1
PFAM: Fimbrial assembly protein (PilN).
 
 
   0.947
AFM25784.1
Type II secretory pathway, component PulF; PFAM: Bacterial type II secretion system protein F domain.
   
   0.827
AFM24111.1
Hypothetical protein.
  
     0.667
AFM25786.1
General secretory pathway protein E/type IV-A pilus assembly ATPase PilB; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
   
 
 0.605
AFM27297.1
Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB; PFAM: Type II/IV secretion system protein; GSPII_E N-terminal domain.
   
 
 0.605
AFM26502.1
Hypothetical protein.
  
     0.591
AFM25550.1
Hypothetical protein.
  
     0.581
AFM24814.1
Hypothetical protein.
  
     0.573
Your Current Organism:
Desulfomonile tiedjei
NCBI taxonomy Id: 706587
Other names: D. tiedjei DSM 6799, Desulfomonile tiedjei DCB-1, Desulfomonile tiedjei DSM 6799, Desulfomonile tiedjei str. DSM 6799, Desulfomonile tiedjei strain DSM 6799
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.