STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM27393.1PFAM: Bacterial regulatory proteins, gntR family; UTRA domain. (245 aa)    
Predicted Functional Partners:
AFM27512.1
ABC-type phosphate/phosphonate transport system, periplasmic component.
  
  
 0.848
AFM27974.1
TIGRFAM: phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein.
  
  
 0.848
AFM24515.1
PFAM: Bacterial regulatory proteins, gntR family; FCD domain.
 
  
 0.780
AFM27394.1
Putative cobalamin binding protein; PFAM: B12 binding domain.
       0.775
AFM27951.1
PFAM: Bacterial regulatory proteins, gntR family; FCD domain.
 
  
 0.732
AFM27944.1
PFAM: Bacterial regulatory proteins, gntR family; FCD domain.
 
  
 0.729
AFM27390.1
PFAM: Uroporphyrinogen decarboxylase (URO-D); Belongs to the uroporphyrinogen decarboxylase family.
 
     0.669
AFM27395.1
PFAM: Protein of unknown function (DUF1638).
 
     0.628
AFM25892.1
Putative transcriptional regulator; PFAM: Cupin domain; Helix-turn-helix.
 
  
 0.619
AFM26841.1
Putative transcriptional regulator; PFAM: Cupin domain; Helix-turn-helix.
  
  
 0.617
Your Current Organism:
Desulfomonile tiedjei
NCBI taxonomy Id: 706587
Other names: D. tiedjei DSM 6799, Desulfomonile tiedjei DCB-1, Desulfomonile tiedjei DSM 6799, Desulfomonile tiedjei str. DSM 6799, Desulfomonile tiedjei strain DSM 6799
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.