STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM27493.1Putative metal-dependent membrane protease; PFAM: CAAX amino terminal protease family. (554 aa)    
Predicted Functional Partners:
AFM23738.1
Hypothetical protein; PFAM: Nucleoside recognition.
   
    0.810
AFM25855.1
GAF domain-containing protein; PFAM: GAF domain.
  
     0.609
AFM24592.1
ABC-type polysaccharide/polyol phosphate export systems, permease component; PFAM: ABC-2 type transporter; TIGRFAM: ABC-2 type transporter, NodJ family.
  
  
 0.573
AFM25533.1
PFAM: ABC-2 type transporter; TIGRFAM: daunorubicin resistance ABC transporter membrane protein.
  
  
 0.573
AFM26439.1
ABC-type multidrug transport system, permease component.
  
  
 0.573
AFM27831.1
ABC-type multidrug transport system, permease component; Manually curated.
  
  
 0.573
AFM27832.1
ABC-type multidrug transport system, permease component.
  
  
 0.573
AFM28048.1
ABC-type polysaccharide/polyol phosphate export systems, permease component; PFAM: ABC-2 type transporter; TIGRFAM: ABC-2 type transporter, NodJ family.
  
  
 0.573
AFM26590.1
PFAM: Nitroreductase family.
  
  
 0.560
AFM26631.1
Nitroreductase; PFAM: 4Fe-4S binding domain; Nitroreductase family.
  
  
 0.551
Your Current Organism:
Desulfomonile tiedjei
NCBI taxonomy Id: 706587
Other names: D. tiedjei DSM 6799, Desulfomonile tiedjei DCB-1, Desulfomonile tiedjei DSM 6799, Desulfomonile tiedjei str. DSM 6799, Desulfomonile tiedjei strain DSM 6799
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.