STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM27536.1PFAM: Bacterial regulatory proteins, gntR family; FCD domain. (243 aa)    
Predicted Functional Partners:
AFM24924.1
PFAM: Bacterial regulatory proteins, gntR family; FCD domain.
 
  
 0.815
AFM27951.1
PFAM: Bacterial regulatory proteins, gntR family; FCD domain.
 
  
 0.807
AFM27944.1
PFAM: Bacterial regulatory proteins, gntR family; FCD domain.
 
  
 0.801
AFM27537.1
PFAM: D-galactarate dehydratase / Altronate hydrolase, C terminus.
       0.783
AFM25910.1
PFAM: Bacterial regulatory proteins, gntR family; FCD domain.
 
  
 0.753
AFM27538.1
Altronate dehydratase; PFAM: SAF domain.
       0.744
AFM27539.1
PFAM: Protein of unknown function (DUF521).
       0.632
AFM23818.1
Transcriptional regulator; PFAM: IclR helix-turn-helix domain; Bacterial transcriptional regulator.
 
  
 0.578
AFM22800.1
PFAM: ACT domain; Small subunit of acetolactate synthase; TIGRFAM: acetolactate synthase, small subunit.
  
    0.563
AFM24515.1
PFAM: Bacterial regulatory proteins, gntR family; FCD domain.
 
  
0.454
Your Current Organism:
Desulfomonile tiedjei
NCBI taxonomy Id: 706587
Other names: D. tiedjei DSM 6799, Desulfomonile tiedjei DCB-1, Desulfomonile tiedjei DSM 6799, Desulfomonile tiedjei str. DSM 6799, Desulfomonile tiedjei strain DSM 6799
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.