STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM27645.1Transcriptional regulator with HTH domain and aminotransferase domain; PFAM: Bacterial regulatory proteins, gntR family; Aminotransferase class I and II. (477 aa)    
Predicted Functional Partners:
AFM24677.1
P-loop ATPase, MinD superfamily; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; 4Fe-4S binding domain.
    
   0.857
AFM26895.1
FAD binding protein,4Fe-4S protein; PFAM: Pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S binding domain.
    
   0.857
AFM27227.1
PFAM: NIF3 (NGG1p interacting factor 3); TIGRFAM: dinuclear metal center protein, YbgI/SA1388 family.
  
    0.583
AFM24035.1
PFAM: Prephenate dehydratase; ACT domain; Chorismate mutase type II; TIGRFAM: chorismate mutase domain of gram positive AroA protein; chorismate mutase domain of proteobacterial P-protein, clade 2.
  
  
 0.575
AFM25229.1
Polyferredoxin; PFAM: 4Fe-4S binding domain.
  
 
 0.567
AFM25909.1
PFAM: Dihydroorotate dehydrogenase.
   
 
 0.527
AFM24156.1
FAD binding protein.
    
   0.522
AFM26498.1
FAD binding protein.
    
   0.522
AFM26898.1
PFAM: Pyridine nucleotide-disulphide oxidoreductase.
    
   0.522
AFM25011.1
(4Fe-4S) cluster-containing protein; PFAM: Uncharacterised ACR, YkgG family COG1556; TIGRFAM: iron-sulfur cluster-binding protein.
    
   0.510
Your Current Organism:
Desulfomonile tiedjei
NCBI taxonomy Id: 706587
Other names: D. tiedjei DSM 6799, Desulfomonile tiedjei DCB-1, Desulfomonile tiedjei DSM 6799, Desulfomonile tiedjei str. DSM 6799, Desulfomonile tiedjei strain DSM 6799
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.