STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM27810.1PFAM: Uncharacterised protein family (UPF0150). (69 aa)    
Predicted Functional Partners:
AFM23736.1
Putative periplasmic or secreted lipoprotein; PFAM: YcfA-like protein.
 
 
 
 0.720
AFM25856.1
PFAM: YcfA-like protein.
   
 
 0.655
AFM25841.1
PFAM: Uncharacterised protein family (UPF0150).
  
     0.525
AFM24030.1
PFAM: Uncharacterised protein family (UPF0150).
  
     0.507
AFM27813.1
Hypothetical protein.
 
     0.455
AFM23735.1
PFAM: Uncharacterised protein family (UPF0150).
  
     0.416
AFM27811.1
PFAM: dUTPase; TIGRFAM: deoxycytidine triphosphate deaminase.
       0.401
Your Current Organism:
Desulfomonile tiedjei
NCBI taxonomy Id: 706587
Other names: D. tiedjei DSM 6799, Desulfomonile tiedjei DCB-1, Desulfomonile tiedjei DSM 6799, Desulfomonile tiedjei str. DSM 6799, Desulfomonile tiedjei strain DSM 6799
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.