SSLN_LOCUS2524 protein (Schistocephalus solidus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SSLN_LOCUS2524

Uncharacterized protein. (770 aa)

Predicted Functional Partners:

SSLN_LOCUS2214

0.883

SSLN_LOCUS5877

0.734

SSLN_LOCUS6274

0.734

SSLN_LOCUS9893

0.734

SSLN_LOCUS2802

0.697

SSLN_LOCUS7764

0.697

A0A183T9V3

0.697

A0A183TMY5

0.697

A0A3P7CQ01

0.697

A0A3P7CQG0

0.697

Your Current Organism:

Schistocephalus solidus

NCBI taxonomy Id: 70667
Other names: S. solidus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A183T9V3	SSLN_LOCUS2214	A0A183T9V3	A0A3P7BQ54	Sema domain-containing protein.	Uncharacterized protein.	0.918
A0A183T9V3	SSLN_LOCUS2524	A0A183T9V3	A0A183SE76	Sema domain-containing protein.	Uncharacterized protein.	0.697
A0A183TMY5	SSLN_LOCUS2214	A0A183TMY5	A0A3P7BQ54	Uncharacterized protein.	Uncharacterized protein.	0.899
A0A183TMY5	SSLN_LOCUS2524	A0A183TMY5	A0A183SE76	Uncharacterized protein.	Uncharacterized protein.	0.697
A0A3P7CQ01	SSLN_LOCUS2214	A0A3P7CQ01	A0A3P7BQ54	Sema domain-containing protein.	Uncharacterized protein.	0.899
A0A3P7CQ01	SSLN_LOCUS2524	A0A3P7CQ01	A0A183SE76	Sema domain-containing protein.	Uncharacterized protein.	0.697
A0A3P7CQG0	SSLN_LOCUS2214	A0A3P7CQG0	A0A3P7BQ54	EGF-like domain-containing protein.	Uncharacterized protein.	0.899
A0A3P7CQG0	SSLN_LOCUS2524	A0A3P7CQG0	A0A183SE76	EGF-like domain-containing protein.	Uncharacterized protein.	0.697
A0A3P7CQG0	SSLN_LOCUS2802	A0A3P7CQG0	A0A183SF04	EGF-like domain-containing protein.	EGF-like domain-containing protein.	0.885
SSLN_LOCUS2214	A0A183T9V3	A0A3P7BQ54	A0A183T9V3	Uncharacterized protein.	Sema domain-containing protein.	0.918
SSLN_LOCUS2214	A0A183TMY5	A0A3P7BQ54	A0A183TMY5	Uncharacterized protein.	Uncharacterized protein.	0.899
SSLN_LOCUS2214	A0A3P7CQ01	A0A3P7BQ54	A0A3P7CQ01	Uncharacterized protein.	Sema domain-containing protein.	0.899
SSLN_LOCUS2214	A0A3P7CQG0	A0A3P7BQ54	A0A3P7CQG0	Uncharacterized protein.	EGF-like domain-containing protein.	0.899
SSLN_LOCUS2214	SSLN_LOCUS2524	A0A3P7BQ54	A0A183SE76	Uncharacterized protein.	Uncharacterized protein.	0.883
SSLN_LOCUS2214	SSLN_LOCUS2802	A0A3P7BQ54	A0A183SF04	Uncharacterized protein.	EGF-like domain-containing protein.	0.899
SSLN_LOCUS2214	SSLN_LOCUS7764	A0A3P7BQ54	A0A183SU66	Uncharacterized protein.	Uncharacterized protein.	0.899
SSLN_LOCUS2524	A0A183T9V3	A0A183SE76	A0A183T9V3	Uncharacterized protein.	Sema domain-containing protein.	0.697
SSLN_LOCUS2524	A0A183TMY5	A0A183SE76	A0A183TMY5	Uncharacterized protein.	Uncharacterized protein.	0.697
SSLN_LOCUS2524	A0A3P7CQ01	A0A183SE76	A0A3P7CQ01	Uncharacterized protein.	Sema domain-containing protein.	0.697
SSLN_LOCUS2524	A0A3P7CQG0	A0A183SE76	A0A3P7CQG0	Uncharacterized protein.	EGF-like domain-containing protein.	0.697