SSLN_LOCUS2870 protein (Schistocephalus solidus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SSLN_LOCUS2870

Uncharacterized protein. (2850 aa)

Predicted Functional Partners:

A0A183TFR3

0.998

SSLN_LOCUS9076

0.978

A0A183TSM5

0.978

SSLN_LOCUS847

0.977

A0A3P7ES87

0.977

SSLN_LOCUS6650

0.972

A0A183T7F8

0.972

SSLN_LOCUS6649

0.972

SSLN_LOCUS2483

0.944

SSLN_LOCUS7999

0.944

Your Current Organism:

Schistocephalus solidus

NCBI taxonomy Id: 70667
Other names: S. solidus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A183T7F8	A0A183TFR3	A0A183T7F8	A0A183TFR3	RGS domain-containing protein.	Uncharacterized protein.	0.969
A0A183T7F8	A0A183TSM5	A0A183T7F8	A0A183TSM5	RGS domain-containing protein.	RGS domain-containing protein.	0.842
A0A183T7F8	A0A3P7ES87	A0A183T7F8	A0A3P7ES87	RGS domain-containing protein.	Uncharacterized protein.	0.820
A0A183T7F8	SSLN_LOCUS2483	A0A183T7F8	A0A183SE35	RGS domain-containing protein.	Uridine-cytidine kinase 2.	0.633
A0A183T7F8	SSLN_LOCUS2870	A0A183T7F8	A0A183SF72	RGS domain-containing protein.	Uncharacterized protein.	0.972
A0A183T7F8	SSLN_LOCUS7999	A0A183T7F8	A0A3P7E6T8	RGS domain-containing protein.	PRK domain-containing protein.	0.633
A0A183T7F8	SSLN_LOCUS847	A0A183T7F8	A0A3P7BWU5	RGS domain-containing protein.	Uncharacterized protein.	0.820
A0A183TFR3	A0A183T7F8	A0A183TFR3	A0A183T7F8	Uncharacterized protein.	RGS domain-containing protein.	0.969
A0A183TFR3	A0A183TSM5	A0A183TFR3	A0A183TSM5	Uncharacterized protein.	RGS domain-containing protein.	0.976
A0A183TFR3	A0A3P7ES87	A0A183TFR3	A0A3P7ES87	Uncharacterized protein.	Uncharacterized protein.	0.923
A0A183TFR3	SSLN_LOCUS2870	A0A183TFR3	A0A183SF72	Uncharacterized protein.	Uncharacterized protein.	0.998
A0A183TFR3	SSLN_LOCUS6649	A0A183TFR3	A0A3P7E306	Uncharacterized protein.	Axin_b-cat_bind domain-containing protein.	0.969
A0A183TFR3	SSLN_LOCUS6650	A0A183TFR3	A0A183SR02	Uncharacterized protein.	DIX domain-containing protein.	0.969
A0A183TFR3	SSLN_LOCUS9076	A0A183TFR3	A0A183SXX8	Uncharacterized protein.	DIX domain-containing protein.	0.976
A0A183TSM5	A0A183T7F8	A0A183TSM5	A0A183T7F8	RGS domain-containing protein.	RGS domain-containing protein.	0.842
A0A183TSM5	A0A183TFR3	A0A183TSM5	A0A183TFR3	RGS domain-containing protein.	Uncharacterized protein.	0.976
A0A183TSM5	A0A3P7ES87	A0A183TSM5	A0A3P7ES87	RGS domain-containing protein.	Uncharacterized protein.	0.869
A0A183TSM5	SSLN_LOCUS2483	A0A183TSM5	A0A183SE35	RGS domain-containing protein.	Uridine-cytidine kinase 2.	0.633
A0A183TSM5	SSLN_LOCUS2870	A0A183TSM5	A0A183SF72	RGS domain-containing protein.	Uncharacterized protein.	0.978
A0A183TSM5	SSLN_LOCUS7999	A0A183TSM5	A0A3P7E6T8	RGS domain-containing protein.	PRK domain-containing protein.	0.633