SSLN_LOCUS6516 protein (Schistocephalus solidus)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

SSLN_LOCUS6516

Uncharacterized protein. (308 aa)

Predicted Functional Partners:

SSLN_LOCUS53

0.989

SSLN_LOCUS905

0.979

A0A183TPZ0

0.960

SSLN_LOCUS2320

0.929

A0A183T698

0.926

A0A3P7CXN1

0.926

SSLN_LOCUS5254

0.924

SSLN_LOCUS9338

0.922

A0A183THY9

0.915

SSLN_LOCUS5898

0.915

Your Current Organism:

Schistocephalus solidus

NCBI taxonomy Id: 70667
Other names: S. solidus

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A183T698	A0A183THY9	A0A183T698	A0A183THY9	60S ribosomal protein L23a.	Uncharacterized protein.	0.988
A0A183T698	A0A183TPZ0	A0A183T698	A0A183TPZ0	60S ribosomal protein L23a.	Glucose-regulated protein; Belongs to the heat shock protein 70 family.	0.487
A0A183T698	A0A3P7CXN1	A0A183T698	A0A3P7CXN1	60S ribosomal protein L23a.	Ribosomal_L18_c domain-containing protein.	0.999
A0A183T698	SSLN_LOCUS2320	A0A183T698	A0A183SDM2	60S ribosomal protein L23a.	Plug_translocon domain-containing protein; Belongs to the SecY/SEC61-alpha family.	0.993
A0A183T698	SSLN_LOCUS5254	A0A183T698	A0A183SM06	60S ribosomal protein L23a.	39S ribosomal protein L22; Belongs to the universal ribosomal protein uL22 family.	0.995
A0A183T698	SSLN_LOCUS53	A0A183T698	A0A183S755	60S ribosomal protein L23a.	Uncharacterized protein.	0.459
A0A183T698	SSLN_LOCUS5898	A0A183T698	A0A3P7CK56	60S ribosomal protein L23a.	Uncharacterized protein.	0.988
A0A183T698	SSLN_LOCUS6516	A0A183T698	A0A183SQL8	60S ribosomal protein L23a.	Uncharacterized protein.	0.926
A0A183T698	SSLN_LOCUS905	A0A183T698	A0A183S9K7	60S ribosomal protein L23a.	Uncharacterized protein.	0.502
A0A183T698	SSLN_LOCUS9338	A0A183T698	A0A3P7CUU8	60S ribosomal protein L23a.	Uncharacterized protein.	0.999
A0A183THY9	A0A183T698	A0A183THY9	A0A183T698	Uncharacterized protein.	60S ribosomal protein L23a.	0.988
A0A183THY9	A0A3P7CXN1	A0A183THY9	A0A3P7CXN1	Uncharacterized protein.	Ribosomal_L18_c domain-containing protein.	0.988
A0A183THY9	SSLN_LOCUS2320	A0A183THY9	A0A183SDM2	Uncharacterized protein.	Plug_translocon domain-containing protein; Belongs to the SecY/SEC61-alpha family.	0.918
A0A183THY9	SSLN_LOCUS5254	A0A183THY9	A0A183SM06	Uncharacterized protein.	39S ribosomal protein L22; Belongs to the universal ribosomal protein uL22 family.	0.994
A0A183THY9	SSLN_LOCUS5898	A0A183THY9	A0A3P7CK56	Uncharacterized protein.	Uncharacterized protein.	0.997
A0A183THY9	SSLN_LOCUS6516	A0A183THY9	A0A183SQL8	Uncharacterized protein.	Uncharacterized protein.	0.915
A0A183THY9	SSLN_LOCUS9338	A0A183THY9	A0A3P7CUU8	Uncharacterized protein.	Uncharacterized protein.	0.986
A0A183TPZ0	A0A183T698	A0A183TPZ0	A0A183T698	Glucose-regulated protein; Belongs to the heat shock protein 70 family.	60S ribosomal protein L23a.	0.487
A0A183TPZ0	A0A3P7CXN1	A0A183TPZ0	A0A3P7CXN1	Glucose-regulated protein; Belongs to the heat shock protein 70 family.	Ribosomal_L18_c domain-containing protein.	0.424
A0A183TPZ0	SSLN_LOCUS2320	A0A183TPZ0	A0A183SDM2	Glucose-regulated protein; Belongs to the heat shock protein 70 family.	Plug_translocon domain-containing protein; Belongs to the SecY/SEC61-alpha family.	0.975