SSLN_LOCUS6771 protein (Schistocephalus solidus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SSLN_LOCUS6771

Uncharacterized protein; Belongs to the glycosyl hydrolase 29 family. (396 aa)

Predicted Functional Partners:

A0A183THM6

0.934

SSLN_LOCUS8450

0.826

SSLN_LOCUS9786

0.796

SSLN_LOCUS6691

0.796

SSLN_LOCUS148

0.742

SSLN_LOCUS602

0.716

SSLN_LOCUS9026

0.716

A0A183T1S0

0.716

SSLN_LOCUS7491

0.716

SSLN_LOCUS6901

0.678

Your Current Organism:

Schistocephalus solidus

NCBI taxonomy Id: 70667
Other names: S. solidus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A183T1S0	A0A183THM6	A0A183T1S0	A0A183THM6	Uncharacterized protein.	Alpha-galactosidase.	0.724
A0A183T1S0	SSLN_LOCUS148	A0A183T1S0	A0A183S7F0	Uncharacterized protein.	Glyco_hydro_35 domain-containing protein.	0.422
A0A183T1S0	SSLN_LOCUS602	A0A183T1S0	A0A183S8Q4	Uncharacterized protein.	MFS domain-containing protein; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.	0.949
A0A183T1S0	SSLN_LOCUS6771	A0A183T1S0	A0A183SRC3	Uncharacterized protein.	Uncharacterized protein; Belongs to the glycosyl hydrolase 29 family.	0.716
A0A183T1S0	SSLN_LOCUS6901	A0A183T1S0	A0A183SRQ3	Uncharacterized protein.	Uncharacterized protein.	0.560
A0A183T1S0	SSLN_LOCUS9026	A0A183T1S0	A0A183SXS8	Uncharacterized protein.	MFS domain-containing protein; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.	0.480
A0A183THM6	A0A183T1S0	A0A183THM6	A0A183T1S0	Alpha-galactosidase.	Uncharacterized protein.	0.724
A0A183THM6	SSLN_LOCUS148	A0A183THM6	A0A183S7F0	Alpha-galactosidase.	Glyco_hydro_35 domain-containing protein.	0.981
A0A183THM6	SSLN_LOCUS602	A0A183THM6	A0A183S8Q4	Alpha-galactosidase.	MFS domain-containing protein; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.	0.724
A0A183THM6	SSLN_LOCUS6771	A0A183THM6	A0A183SRC3	Alpha-galactosidase.	Uncharacterized protein; Belongs to the glycosyl hydrolase 29 family.	0.934
A0A183THM6	SSLN_LOCUS6901	A0A183THM6	A0A183SRQ3	Alpha-galactosidase.	Uncharacterized protein.	0.942
A0A183THM6	SSLN_LOCUS7491	A0A183THM6	A0A3P7CJU6	Alpha-galactosidase.	Uncharacterized protein.	0.724
A0A183THM6	SSLN_LOCUS9026	A0A183THM6	A0A183SXS8	Alpha-galactosidase.	MFS domain-containing protein; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.	0.724
SSLN_LOCUS148	A0A183T1S0	A0A183S7F0	A0A183T1S0	Glyco_hydro_35 domain-containing protein.	Uncharacterized protein.	0.422
SSLN_LOCUS148	A0A183THM6	A0A183S7F0	A0A183THM6	Glyco_hydro_35 domain-containing protein.	Alpha-galactosidase.	0.981
SSLN_LOCUS148	SSLN_LOCUS602	A0A183S7F0	A0A183S8Q4	Glyco_hydro_35 domain-containing protein.	MFS domain-containing protein; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.	0.422
SSLN_LOCUS148	SSLN_LOCUS6771	A0A183S7F0	A0A183SRC3	Glyco_hydro_35 domain-containing protein.	Uncharacterized protein; Belongs to the glycosyl hydrolase 29 family.	0.742
SSLN_LOCUS148	SSLN_LOCUS6901	A0A183S7F0	A0A183SRQ3	Glyco_hydro_35 domain-containing protein.	Uncharacterized protein.	0.823
SSLN_LOCUS148	SSLN_LOCUS7491	A0A183S7F0	A0A3P7CJU6	Glyco_hydro_35 domain-containing protein.	Uncharacterized protein.	0.422
SSLN_LOCUS148	SSLN_LOCUS9026	A0A183S7F0	A0A183SXS8	Glyco_hydro_35 domain-containing protein.	MFS domain-containing protein; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.	0.422