SSLN_LOCUS9718 protein (Schistocephalus solidus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SSLN_LOCUS9718

F-box domain-containing protein. (608 aa)

Predicted Functional Partners:

SSLN_LOCUS1258

0.551

SSLN_LOCUS8965

0.477

SSLN_LOCUS5731

0.452

SSLN_LOCUS1018

0.452

A0A183TGD2

0.442

SSLN_LOCUS4338

0.441

SSLN_LOCUS4141

0.400

Your Current Organism:

Schistocephalus solidus

NCBI taxonomy Id: 70667
Other names: S. solidus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A183TGD2	SSLN_LOCUS8965	A0A183TGD2	A0A3P7CD23	Uncharacterized protein; Belongs to the SKP1 family.	Bromo domain-containing protein.	0.617
A0A183TGD2	SSLN_LOCUS9718	A0A183TGD2	A0A183SZR9	Uncharacterized protein; Belongs to the SKP1 family.	F-box domain-containing protein.	0.442
SSLN_LOCUS1018	SSLN_LOCUS9718	A0A3P7DIK6	A0A183SZR9	Uncharacterized protein.	F-box domain-containing protein.	0.452
SSLN_LOCUS1258	SSLN_LOCUS4141	A0A183SAL0	A0A183SIU3	BcrAD_BadFG domain-containing protein.	Uncharacterized protein.	0.511
SSLN_LOCUS1258	SSLN_LOCUS9718	A0A183SAL0	A0A183SZR9	BcrAD_BadFG domain-containing protein.	F-box domain-containing protein.	0.551
SSLN_LOCUS4141	SSLN_LOCUS1258	A0A183SIU3	A0A183SAL0	Uncharacterized protein.	BcrAD_BadFG domain-containing protein.	0.511
SSLN_LOCUS4141	SSLN_LOCUS9718	A0A183SIU3	A0A183SZR9	Uncharacterized protein.	F-box domain-containing protein.	0.400
SSLN_LOCUS4338	SSLN_LOCUS5731	A0A183SJE0	A0A183SND3	Uncharacterized protein.	Uncharacterized protein.	0.614
SSLN_LOCUS4338	SSLN_LOCUS9718	A0A183SJE0	A0A183SZR9	Uncharacterized protein.	F-box domain-containing protein.	0.441
SSLN_LOCUS5731	SSLN_LOCUS4338	A0A183SND3	A0A183SJE0	Uncharacterized protein.	Uncharacterized protein.	0.614
SSLN_LOCUS5731	SSLN_LOCUS9718	A0A183SND3	A0A183SZR9	Uncharacterized protein.	F-box domain-containing protein.	0.452
SSLN_LOCUS8965	A0A183TGD2	A0A3P7CD23	A0A183TGD2	Bromo domain-containing protein.	Uncharacterized protein; Belongs to the SKP1 family.	0.617
SSLN_LOCUS8965	SSLN_LOCUS9718	A0A3P7CD23	A0A183SZR9	Bromo domain-containing protein.	F-box domain-containing protein.	0.477
SSLN_LOCUS9718	A0A183TGD2	A0A183SZR9	A0A183TGD2	F-box domain-containing protein.	Uncharacterized protein; Belongs to the SKP1 family.	0.442
SSLN_LOCUS9718	SSLN_LOCUS1018	A0A183SZR9	A0A3P7DIK6	F-box domain-containing protein.	Uncharacterized protein.	0.452
SSLN_LOCUS9718	SSLN_LOCUS1258	A0A183SZR9	A0A183SAL0	F-box domain-containing protein.	BcrAD_BadFG domain-containing protein.	0.551
SSLN_LOCUS9718	SSLN_LOCUS4141	A0A183SZR9	A0A183SIU3	F-box domain-containing protein.	Uncharacterized protein.	0.400
SSLN_LOCUS9718	SSLN_LOCUS4338	A0A183SZR9	A0A183SJE0	F-box domain-containing protein.	Uncharacterized protein.	0.441
SSLN_LOCUS9718	SSLN_LOCUS5731	A0A183SZR9	A0A183SND3	F-box domain-containing protein.	Uncharacterized protein.	0.452
SSLN_LOCUS9718	SSLN_LOCUS8965	A0A183SZR9	A0A3P7CD23	F-box domain-containing protein.	Bromo domain-containing protein.	0.477