A0A183T154 protein (Schistocephalus solidus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A183T154

DUF663 domain-containing protein. (378 aa)

Predicted Functional Partners:

SSLN_LOCUS4202

0.996

SSLN_LOCUS5468

0.996

A0A183TDQ6

0.995

SSLN_LOCUS4201

0.995

SSLN_LOCUS6257

0.994

A0A3P7DD69

0.994

A0A183TEL8

0.993

SSLN_LOCUS3036

0.992

SSLN_LOCUS7904

0.992

SSLN_LOCUS6173

0.991

Your Current Organism:

Schistocephalus solidus

NCBI taxonomy Id: 70667
Other names: S. solidus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A183T154	A0A183TDQ6	A0A183T154	A0A183TDQ6	DUF663 domain-containing protein.	Nucleolar protein 10.	0.995
A0A183T154	A0A183TEL8	A0A183T154	A0A183TEL8	DUF663 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.993
A0A183T154	A0A3P7DD69	A0A183T154	A0A3P7DD69	DUF663 domain-containing protein.	Uncharacterized protein.	0.994
A0A183T154	SSLN_LOCUS3036	A0A183T154	A0A183SFN8	DUF663 domain-containing protein.	Uncharacterized protein.	0.992
A0A183T154	SSLN_LOCUS4201	A0A183T154	A0A3P7C9T2	DUF663 domain-containing protein.	Uncharacterized protein.	0.995
A0A183T154	SSLN_LOCUS4202	A0A183T154	A0A183SJ04	DUF663 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.996
A0A183T154	SSLN_LOCUS5468	A0A183T154	A0A183SMM0	DUF663 domain-containing protein.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.996
A0A183T154	SSLN_LOCUS6173	A0A183T154	A0A183SPM5	DUF663 domain-containing protein.	Uncharacterized protein.	0.991
A0A183T154	SSLN_LOCUS6257	A0A183T154	A0A3P7C2U9	DUF663 domain-containing protein.	Utp21 domain-containing protein.	0.994
A0A183T154	SSLN_LOCUS7904	A0A183T154	A0A3P7C7W2	DUF663 domain-containing protein.	Uncharacterized protein.	0.992
A0A183TDQ6	A0A183T154	A0A183TDQ6	A0A183T154	Nucleolar protein 10.	DUF663 domain-containing protein.	0.995
A0A183TDQ6	A0A183TEL8	A0A183TDQ6	A0A183TEL8	Nucleolar protein 10.	WD_REPEATS_REGION domain-containing protein.	0.999
A0A183TDQ6	A0A3P7DD69	A0A183TDQ6	A0A3P7DD69	Nucleolar protein 10.	Uncharacterized protein.	0.996
A0A183TDQ6	SSLN_LOCUS3036	A0A183TDQ6	A0A183SFN8	Nucleolar protein 10.	Uncharacterized protein.	0.995
A0A183TDQ6	SSLN_LOCUS4201	A0A183TDQ6	A0A3P7C9T2	Nucleolar protein 10.	Uncharacterized protein.	0.997
A0A183TDQ6	SSLN_LOCUS4202	A0A183TDQ6	A0A183SJ04	Nucleolar protein 10.	WD_REPEATS_REGION domain-containing protein.	0.995
A0A183TDQ6	SSLN_LOCUS5468	A0A183TDQ6	A0A183SMM0	Nucleolar protein 10.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.999
A0A183TDQ6	SSLN_LOCUS6173	A0A183TDQ6	A0A183SPM5	Nucleolar protein 10.	Uncharacterized protein.	0.998
A0A183TDQ6	SSLN_LOCUS6257	A0A183TDQ6	A0A3P7C2U9	Nucleolar protein 10.	Utp21 domain-containing protein.	0.999
A0A183TDQ6	SSLN_LOCUS7904	A0A183TDQ6	A0A3P7C7W2	Nucleolar protein 10.	Uncharacterized protein.	0.998