A0A183TJ07 protein (Schistocephalus solidus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A183TJ07

ABC transmembrane type-1 domain-containing protein. (264 aa)

Predicted Functional Partners:

A0A3P7F7Q6

0.931

SSLN_LOCUS6241

0.900

A0A3P7EJG4

0.900

KATNAL2

0.730

A0A183T643

0.720

SSLN_LOCUS6704

0.703

A0A183T7Q3

0.702

A0A183TQ89

0.701

A0A183T237

0.698

A0A183THC8

0.671

Your Current Organism:

Schistocephalus solidus

NCBI taxonomy Id: 70667
Other names: S. solidus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A183T237	A0A183T643	A0A183T237	A0A183T643	UCH domain-containing protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.659
A0A183T237	A0A183TJ07	A0A183T237	A0A183TJ07	UCH domain-containing protein.	ABC transmembrane type-1 domain-containing protein.	0.698
A0A183T237	A0A3P7EJG4	A0A183T237	A0A3P7EJG4	UCH domain-containing protein.	ABC transporter domain-containing protein.	0.693
A0A183T237	A0A3P7F7Q6	A0A183T237	A0A3P7F7Q6	UCH domain-containing protein.	ABC transporter domain-containing protein.	0.609
A0A183T237	SSLN_LOCUS6241	A0A183T237	A0A183SPU3	UCH domain-containing protein.	Uncharacterized protein.	0.656
A0A183T237	SSLN_LOCUS6704	A0A183T237	A0A183SR56	UCH domain-containing protein.	Uncharacterized protein.	0.609
A0A183T643	A0A183T237	A0A183T643	A0A183T237	Uncharacterized protein; Belongs to the AAA ATPase family.	UCH domain-containing protein.	0.659
A0A183T643	A0A183THC8	A0A183T643	A0A183THC8	Uncharacterized protein; Belongs to the AAA ATPase family.	RING-type domain-containing protein.	0.739
A0A183T643	A0A183TJ07	A0A183T643	A0A183TJ07	Uncharacterized protein; Belongs to the AAA ATPase family.	ABC transmembrane type-1 domain-containing protein.	0.720
A0A183T643	A0A183TQ89	A0A183T643	A0A183TQ89	Uncharacterized protein; Belongs to the AAA ATPase family.	SCP2 domain-containing protein.	0.483
A0A183T643	A0A3P7EJG4	A0A183T643	A0A3P7EJG4	Uncharacterized protein; Belongs to the AAA ATPase family.	ABC transporter domain-containing protein.	0.715
A0A183T643	A0A3P7F7Q6	A0A183T643	A0A3P7F7Q6	Uncharacterized protein; Belongs to the AAA ATPase family.	ABC transporter domain-containing protein.	0.558
A0A183T643	KATNAL2	A0A183T643	A0A3P7BHJ1	Uncharacterized protein; Belongs to the AAA ATPase family.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.556
A0A183T643	SSLN_LOCUS6241	A0A183T643	A0A183SPU3	Uncharacterized protein; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.652
A0A183T643	SSLN_LOCUS6704	A0A183T643	A0A183SR56	Uncharacterized protein; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.558
A0A183T7Q3	A0A183TJ07	A0A183T7Q3	A0A183TJ07	PDZ domain-containing protein.	ABC transmembrane type-1 domain-containing protein.	0.702
A0A183T7Q3	A0A3P7EJG4	A0A183T7Q3	A0A3P7EJG4	PDZ domain-containing protein.	ABC transporter domain-containing protein.	0.685
A0A183T7Q3	SSLN_LOCUS6241	A0A183T7Q3	A0A183SPU3	PDZ domain-containing protein.	Uncharacterized protein.	0.420
A0A183THC8	A0A183T643	A0A183THC8	A0A183T643	RING-type domain-containing protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.739
A0A183THC8	A0A183TJ07	A0A183THC8	A0A183TJ07	RING-type domain-containing protein.	ABC transmembrane type-1 domain-containing protein.	0.671