A0A3P7D5S2 protein (Schistocephalus solidus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A3P7D5S2

XRN_N domain-containing protein. (69 aa)

Predicted Functional Partners:

SSLN_LOCUS4001

0.985

A0A183T7J0

0.960

LSM3

0.959

A0A183T6Q8

0.938

A0A3P7D7G3

0.926

A0A183TPU2

0.919

A0A183TUG6

0.915

SSLN_LOCUS2565

0.900

SSLN_LOCUS8240

0.884

A0A3P7EPR4

0.880

Your Current Organism:

Schistocephalus solidus

NCBI taxonomy Id: 70667
Other names: S. solidus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A183T6Q8	A0A183T7J0	A0A183T6Q8	A0A183T7J0	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II.	Uncharacterized protein.	0.514
A0A183T6Q8	A0A3P7D5S2	A0A183T6Q8	A0A3P7D5S2	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II.	XRN_N domain-containing protein.	0.938
A0A183T6Q8	A0A3P7D7G3	A0A183T6Q8	A0A3P7D7G3	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II.	Nudix hydrolase domain-containing protein; Belongs to the Nudix hydrolase family.	0.513
A0A183T6Q8	SSLN_LOCUS2565	A0A183T6Q8	A0A3P7BUN9	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II.	Uncharacterized protein.	0.509
A0A183T6Q8	SSLN_LOCUS4001	A0A183T6Q8	A0A183SIF3	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II.	Uncharacterized protein.	0.528
A0A183T6Q8	SSLN_LOCUS8240	A0A183T6Q8	A0A183SVJ2	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II.	Uncharacterized protein.	0.714
A0A183T7J0	A0A183T6Q8	A0A183T7J0	A0A183T6Q8	Uncharacterized protein.	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II.	0.514
A0A183T7J0	A0A3P7D5S2	A0A183T7J0	A0A3P7D5S2	Uncharacterized protein.	XRN_N domain-containing protein.	0.960
A0A183T7J0	A0A3P7D7G3	A0A183T7J0	A0A3P7D7G3	Uncharacterized protein.	Nudix hydrolase domain-containing protein; Belongs to the Nudix hydrolase family.	0.924
A0A183T7J0	LSM3	A0A183T7J0	A0A183S8S5	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.998
A0A183T7J0	SSLN_LOCUS2565	A0A183T7J0	A0A3P7BUN9	Uncharacterized protein.	Uncharacterized protein.	0.922
A0A183T7J0	SSLN_LOCUS4001	A0A183T7J0	A0A183SIF3	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A183T7J0	SSLN_LOCUS8240	A0A183T7J0	A0A183SVJ2	Uncharacterized protein.	Uncharacterized protein.	0.699
A0A183TPU2	A0A3P7D5S2	A0A183TPU2	A0A3P7D5S2	DKCLD domain-containing protein.	XRN_N domain-containing protein.	0.919
A0A183TUG6	A0A3P7D5S2	A0A183TUG6	A0A3P7D5S2	Uncharacterized protein.	XRN_N domain-containing protein.	0.915
A0A183TUG6	SSLN_LOCUS8240	A0A183TUG6	A0A183SVJ2	Uncharacterized protein.	Uncharacterized protein.	0.930
A0A3P7D5S2	A0A183T6Q8	A0A3P7D5S2	A0A183T6Q8	XRN_N domain-containing protein.	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II.	0.938
A0A3P7D5S2	A0A183T7J0	A0A3P7D5S2	A0A183T7J0	XRN_N domain-containing protein.	Uncharacterized protein.	0.960
A0A3P7D5S2	A0A183TPU2	A0A3P7D5S2	A0A183TPU2	XRN_N domain-containing protein.	DKCLD domain-containing protein.	0.919
A0A3P7D5S2	A0A183TUG6	A0A3P7D5S2	A0A183TUG6	XRN_N domain-containing protein.	Uncharacterized protein.	0.915