A0A139WD08 protein (Tribolium castaneum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A139WD08

Transducin beta-like protein 2. (343 aa)

Predicted Functional Partners:

A0A139WGQ7

0.615

D6WLP1_TRICA

0.612

Mad2

0.611

D6X122_TRICA

0.604

D2A3I8_TRICA

0.587

D6WJV3_TRICA

0.586

D7EL47_TRICA

0.586

A0A139WMH4

0.582

D6WYI0_TRICA

0.581

A0A139WIR7

0.580

Your Current Organism:

Tribolium castaneum

NCBI taxonomy Id: 7070
Other names: T. castaneum, red flour beetle, rust-red flour beetle

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A139WD08	A0A139WGQ7	A0A139WD08	A0A139WGQ7	Transducin beta-like protein 2.	MLX-interacting protein-like protein.	0.615
A0A139WD08	A0A139WIR7	A0A139WD08	A0A139WIR7	Transducin beta-like protein 2.	WD repeat-containing protein 6-like Protein.	0.580
A0A139WD08	A0A139WMH4	A0A139WD08	A0A139WMH4	Transducin beta-like protein 2.	Transcription initiation factor TFIID subunit 4-like Protein.	0.582
A0A139WD08	D2A3I8_TRICA	A0A139WD08	D2A3I8	Transducin beta-like protein 2.	Transcription initiation factor TFIID subunit 12-like Protein.	0.587
A0A139WD08	D6WJV3_TRICA	A0A139WD08	D6WJV3	Transducin beta-like protein 2.	Transcription initiation factor TFIID subunit 10-like Protein.	0.586
A0A139WD08	D6WLP1_TRICA	A0A139WD08	D6WLP1	Transducin beta-like protein 2.	Polynucleotide 5'-triphosphatase; Bifunctional mRNA-capping enzyme exhibiting RNA 5'- triphosphatase activity in the N-terminal part and mRNA guanylyltransferase activity in the C-terminal part. Catalyzes the first two steps of cap formation: by removing the gamma-phosphate from the 5'-triphosphate end of nascent mRNA to yield a diphosphate end, and by transferring the gmp moiety of GTP to the 5'-diphosphate terminus.	0.612
A0A139WD08	D6WYI0_TRICA	A0A139WD08	D6WYI0	Transducin beta-like protein 2.	Intraflagellar transport protein 140 homolog-like Protein.	0.581
A0A139WD08	D6X122_TRICA	A0A139WD08	D6X122	Transducin beta-like protein 2.	Uncharacterized protein.	0.604
A0A139WD08	D7EL47_TRICA	A0A139WD08	D7EL47	Transducin beta-like protein 2.	Uncharacterized protein.	0.586
A0A139WD08	Mad2	A0A139WD08	D6WMW7	Transducin beta-like protein 2.	Mitotic spindle assembly checkpoint protein Mad2.	0.611
A0A139WGQ7	A0A139WD08	A0A139WGQ7	A0A139WD08	MLX-interacting protein-like protein.	Transducin beta-like protein 2.	0.615
A0A139WIR7	A0A139WD08	A0A139WIR7	A0A139WD08	WD repeat-containing protein 6-like Protein.	Transducin beta-like protein 2.	0.580
A0A139WMH4	A0A139WD08	A0A139WMH4	A0A139WD08	Transcription initiation factor TFIID subunit 4-like Protein.	Transducin beta-like protein 2.	0.582
A0A139WMH4	D2A3I8_TRICA	A0A139WMH4	D2A3I8	Transcription initiation factor TFIID subunit 4-like Protein.	Transcription initiation factor TFIID subunit 12-like Protein.	0.999
A0A139WMH4	D6WJV3_TRICA	A0A139WMH4	D6WJV3	Transcription initiation factor TFIID subunit 4-like Protein.	Transcription initiation factor TFIID subunit 10-like Protein.	0.999
A0A139WMH4	D7EL47_TRICA	A0A139WMH4	D7EL47	Transcription initiation factor TFIID subunit 4-like Protein.	Uncharacterized protein.	0.999
D2A3I8_TRICA	A0A139WD08	D2A3I8	A0A139WD08	Transcription initiation factor TFIID subunit 12-like Protein.	Transducin beta-like protein 2.	0.587
D2A3I8_TRICA	A0A139WMH4	D2A3I8	A0A139WMH4	Transcription initiation factor TFIID subunit 12-like Protein.	Transcription initiation factor TFIID subunit 4-like Protein.	0.999
D2A3I8_TRICA	D6WJV3_TRICA	D2A3I8	D6WJV3	Transcription initiation factor TFIID subunit 12-like Protein.	Transcription initiation factor TFIID subunit 10-like Protein.	0.999
D2A3I8_TRICA	D7EL47_TRICA	D2A3I8	D7EL47	Transcription initiation factor TFIID subunit 12-like Protein.	Uncharacterized protein.	0.999