A0A139WHB7 protein (Tribolium castaneum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A139WHB7

Pupal cuticle protein Edg-78E-like Protein. (135 aa)

Predicted Functional Partners:

D6X384_TRICA

0.795

D6X1C7_TRICA

0.649

A0A139WMA9

0.643

A0A139WIE6

0.622

D6W744_TRICA

0.604

A0A139W9Z2

0.589

D2A622_TRICA

0.589

D6W6J4_TRICA

0.584

D6X0N2_TRICA

0.584

D6X1U5_TRICA

0.584

Your Current Organism:

Tribolium castaneum

NCBI taxonomy Id: 7070
Other names: T. castaneum, red flour beetle, rust-red flour beetle

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A139W9Z2	A0A139WHB7	A0A139W9Z2	A0A139WHB7	Uncharacterized protein.	Pupal cuticle protein Edg-78E-like Protein.	0.589
A0A139W9Z2	A0A139WIE6	A0A139W9Z2	A0A139WIE6	Uncharacterized protein.	annotation not available	0.952
A0A139W9Z2	A0A139WMA9	A0A139W9Z2	A0A139WMA9	Uncharacterized protein.	Protein polybromo-1-like Protein.	0.951
A0A139W9Z2	D6W6J4_TRICA	A0A139W9Z2	D6W6J4	Uncharacterized protein.	Actin-87E-like Protein; Belongs to the actin family.	0.879
A0A139W9Z2	D6W744_TRICA	A0A139W9Z2	D6W744	Uncharacterized protein.	ARID domain-containing protein.	0.912
A0A139W9Z2	D6X0N2_TRICA	A0A139W9Z2	D6X0N2	Uncharacterized protein.	Actin-87E-like Protein; Belongs to the actin family.	0.879
A0A139W9Z2	D6X1C7_TRICA	A0A139W9Z2	D6X1C7	Uncharacterized protein.	Brahma-associated protein of 60 kDa-like Protein.	0.966
A0A139W9Z2	D6X1U5_TRICA	A0A139W9Z2	D6X1U5	Uncharacterized protein.	SWI/SNF complex subunit SMARCC2-like Protein.	0.872
A0A139W9Z2	D6X384_TRICA	A0A139W9Z2	D6X384	Uncharacterized protein.	Histone H2A deubiquitinase MYSM1-like Protein.	0.878
A0A139WHB7	A0A139W9Z2	A0A139WHB7	A0A139W9Z2	Pupal cuticle protein Edg-78E-like Protein.	Uncharacterized protein.	0.589
A0A139WHB7	A0A139WIE6	A0A139WHB7	A0A139WIE6	Pupal cuticle protein Edg-78E-like Protein.	annotation not available	0.622
A0A139WHB7	A0A139WMA9	A0A139WHB7	A0A139WMA9	Pupal cuticle protein Edg-78E-like Protein.	Protein polybromo-1-like Protein.	0.643
A0A139WHB7	D2A622_TRICA	A0A139WHB7	D2A622	Pupal cuticle protein Edg-78E-like Protein.	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1.	0.589
A0A139WHB7	D6W6J4_TRICA	A0A139WHB7	D6W6J4	Pupal cuticle protein Edg-78E-like Protein.	Actin-87E-like Protein; Belongs to the actin family.	0.584
A0A139WHB7	D6W744_TRICA	A0A139WHB7	D6W744	Pupal cuticle protein Edg-78E-like Protein.	ARID domain-containing protein.	0.604
A0A139WHB7	D6X0N2_TRICA	A0A139WHB7	D6X0N2	Pupal cuticle protein Edg-78E-like Protein.	Actin-87E-like Protein; Belongs to the actin family.	0.584
A0A139WHB7	D6X1C7_TRICA	A0A139WHB7	D6X1C7	Pupal cuticle protein Edg-78E-like Protein.	Brahma-associated protein of 60 kDa-like Protein.	0.649
A0A139WHB7	D6X1U5_TRICA	A0A139WHB7	D6X1U5	Pupal cuticle protein Edg-78E-like Protein.	SWI/SNF complex subunit SMARCC2-like Protein.	0.584
A0A139WHB7	D6X384_TRICA	A0A139WHB7	D6X384	Pupal cuticle protein Edg-78E-like Protein.	Histone H2A deubiquitinase MYSM1-like Protein.	0.795
A0A139WIE6	A0A139W9Z2	A0A139WIE6	A0A139W9Z2	annotation not available	Uncharacterized protein.	0.952