STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Txnl4aThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)    
Predicted Functional Partners:
D6WW85_TRICA
Pre-mRNA-processing factor 6-like Protein.
    
 0.999
A0A139WNM0
Putative U5 small nuclear ribonucleoprotein 200 kDa helicase-like Protein.
    
 0.996
D6WUJ3_TRICA
Elongation factor 2-like Protein.
    
 0.996
D6WZU4_TRICA
Uncharacterized protein.
    
 0.996
GLEAN_10565
MPN domain-containing protein.
    
 0.995
D6X2L5_TRICA
U4/U6 small nuclear ribonucleoprotein Prp31-like Protein.
    
 0.992
D2A4U7_TRICA
Small nuclear ribonucleoprotein Sm D3.
   
  0.989
D6X2J3_TRICA
Small nuclear ribonucleoprotein G.
   
 0.989
D6WJA4_TRICA
ATP-dependent RNA helicase abstrakt-like Protein; Belongs to the DEAD box helicase family.
    
 0.986
D6X2W1_TRICA
Zinc finger matrin-type protein 2-like Protein.
    
 0.984
Your Current Organism:
Tribolium castaneum
NCBI taxonomy Id: 7070
Other names: T. castaneum, red flour beetle, rust-red flour beetle
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