D2A3T9_TRICA protein (Tribolium castaneum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

D2A3T9_TRICA

DNA repair protein REV1-like Protein. (825 aa)

Predicted Functional Partners:

D6WCU5_TRICA

0.993

D6W6E6_TRICA

0.990

D6WQQ2_TRICA

0.980

D6WQ70_TRICA

0.961

Pub

0.936

A0A139WM00

0.930

D2A1G0_TRICA

0.886

D6X2L3_TRICA

0.877

D6WXN8_TRICA

0.806

D6WSX8_TRICA

0.805

Your Current Organism:

Tribolium castaneum

NCBI taxonomy Id: 7070
Other names: T. castaneum, red flour beetle, rust-red flour beetle

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A139WM00	D2A3T9_TRICA	A0A139WM00	D2A3T9	Uncharacterized protein.	DNA repair protein REV1-like Protein.	0.930
A0A139WM00	D6W6E6_TRICA	A0A139WM00	D6W6E6	Uncharacterized protein.	DNA polymerase eta-like Protein.	0.527
A0A139WM00	D6WCU5_TRICA	A0A139WM00	D6WCU5	Uncharacterized protein.	DNA polymerase.	0.888
A0A139WM00	D6WQQ2_TRICA	A0A139WM00	D6WQQ2	Uncharacterized protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.977
A0A139WM00	D6WSX8_TRICA	A0A139WM00	D6WSX8	Uncharacterized protein.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.869
A0A139WM00	D6WXN8_TRICA	A0A139WM00	D6WXN8	Uncharacterized protein.	DNA polymerase delta small subunit-like Protein.	0.998
D2A1G0_TRICA	D2A3T9_TRICA	D2A1G0	D2A3T9	Ubiquitin-60S ribosomal protein L40-like Protein.	DNA repair protein REV1-like Protein.	0.886
D2A1G0_TRICA	D6W6E6_TRICA	D2A1G0	D6W6E6	Ubiquitin-60S ribosomal protein L40-like Protein.	DNA polymerase eta-like Protein.	0.782
D2A1G0_TRICA	D6WCU5_TRICA	D2A1G0	D6WCU5	Ubiquitin-60S ribosomal protein L40-like Protein.	DNA polymerase.	0.639
D2A1G0_TRICA	D6WQ70_TRICA	D2A1G0	D6WQ70	Ubiquitin-60S ribosomal protein L40-like Protein.	DNA polymerase iota-like Protein.	0.865
D2A1G0_TRICA	D6WQQ2_TRICA	D2A1G0	D6WQQ2	Ubiquitin-60S ribosomal protein L40-like Protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.931
D2A1G0_TRICA	D6WSX8_TRICA	D2A1G0	D6WSX8	Ubiquitin-60S ribosomal protein L40-like Protein.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.637
D2A1G0_TRICA	D6X2L3_TRICA	D2A1G0	D6X2L3	Ubiquitin-60S ribosomal protein L40-like Protein.	Gamma-glutamylcyclotransferase-like Protein.	0.999
D2A1G0_TRICA	Pub	D2A1G0	D6WQT5	Ubiquitin-60S ribosomal protein L40-like Protein.	Polyubiquitin-like Protein.	0.999
D2A3T9_TRICA	A0A139WM00	D2A3T9	A0A139WM00	DNA repair protein REV1-like Protein.	Uncharacterized protein.	0.930
D2A3T9_TRICA	D2A1G0_TRICA	D2A3T9	D2A1G0	DNA repair protein REV1-like Protein.	Ubiquitin-60S ribosomal protein L40-like Protein.	0.886
D2A3T9_TRICA	D6W6E6_TRICA	D2A3T9	D6W6E6	DNA repair protein REV1-like Protein.	DNA polymerase eta-like Protein.	0.990
D2A3T9_TRICA	D6WCU5_TRICA	D2A3T9	D6WCU5	DNA repair protein REV1-like Protein.	DNA polymerase.	0.993
D2A3T9_TRICA	D6WQ70_TRICA	D2A3T9	D6WQ70	DNA repair protein REV1-like Protein.	DNA polymerase iota-like Protein.	0.961
D2A3T9_TRICA	D6WQQ2_TRICA	D2A3T9	D6WQQ2	DNA repair protein REV1-like Protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.980