D2CG00_TRICA protein (Tribolium castaneum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

D2CG00_TRICA

Niemann-Pick C1 protein-like Protein. (1357 aa)

Predicted Functional Partners:

ML1

0.977

D2A0E5_TRICA

0.977

ML5

0.969

ML4

0.962

ML3

0.962

ML8

0.952

D2A113_TRICA

0.928

A0A139WDS2

0.904

D2A0I8_TRICA

0.902

A0A139WPN2

0.900

Your Current Organism:

Tribolium castaneum

NCBI taxonomy Id: 7070
Other names: T. castaneum, red flour beetle, rust-red flour beetle

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A139WDS2	A0A139WPN2	A0A139WDS2	A0A139WPN2	Niemann-Pick C1 protein-like Protein.	Patched domain-containing protein 3-like protein.	0.900
A0A139WDS2	D2A0E5_TRICA	A0A139WDS2	D2A0E5	Niemann-Pick C1 protein-like Protein.	Protein NPC2 homolog-like Protein.	0.962
A0A139WDS2	D2A0I8_TRICA	A0A139WDS2	D2A0I8	Niemann-Pick C1 protein-like Protein.	MD-2-related lipid-recognition protein-like Protein.	0.900
A0A139WDS2	D2A113_TRICA	A0A139WDS2	D2A113	Niemann-Pick C1 protein-like Protein.	Sterol regulatory element-binding protein 1-like Protein.	0.928
A0A139WDS2	D2CG00_TRICA	A0A139WDS2	D2CG00	Niemann-Pick C1 protein-like Protein.	Niemann-Pick C1 protein-like Protein.	0.904
A0A139WDS2	ML1	A0A139WDS2	D2A0E4	Niemann-Pick C1 protein-like Protein.	Protein NPC2 homolog-like Protein.	0.962
A0A139WDS2	ML3	A0A139WDS2	D6WK06	Niemann-Pick C1 protein-like Protein.	ML domain-containing protein.	0.962
A0A139WDS2	ML4	A0A139WDS2	A0A139WI79	Niemann-Pick C1 protein-like Protein.	Protein NPC2 homolog-like protein.	0.962
A0A139WDS2	ML5	A0A139WDS2	D6WPC4	Niemann-Pick C1 protein-like Protein.	Protein NPC2 homolog-like Protein.	0.962
A0A139WDS2	ML8	A0A139WDS2	D6WPC3	Niemann-Pick C1 protein-like Protein.	ML domain-containing protein.	0.952
A0A139WPN2	A0A139WDS2	A0A139WPN2	A0A139WDS2	Patched domain-containing protein 3-like protein.	Niemann-Pick C1 protein-like Protein.	0.900
A0A139WPN2	D2A0E5_TRICA	A0A139WPN2	D2A0E5	Patched domain-containing protein 3-like protein.	Protein NPC2 homolog-like Protein.	0.900
A0A139WPN2	D2A0I8_TRICA	A0A139WPN2	D2A0I8	Patched domain-containing protein 3-like protein.	MD-2-related lipid-recognition protein-like Protein.	0.900
A0A139WPN2	D2CG00_TRICA	A0A139WPN2	D2CG00	Patched domain-containing protein 3-like protein.	Niemann-Pick C1 protein-like Protein.	0.900
A0A139WPN2	ML1	A0A139WPN2	D2A0E4	Patched domain-containing protein 3-like protein.	Protein NPC2 homolog-like Protein.	0.900
A0A139WPN2	ML3	A0A139WPN2	D6WK06	Patched domain-containing protein 3-like protein.	ML domain-containing protein.	0.900
A0A139WPN2	ML4	A0A139WPN2	A0A139WI79	Patched domain-containing protein 3-like protein.	Protein NPC2 homolog-like protein.	0.900
A0A139WPN2	ML5	A0A139WPN2	D6WPC4	Patched domain-containing protein 3-like protein.	Protein NPC2 homolog-like Protein.	0.900
A0A139WPN2	ML8	A0A139WPN2	D6WPC3	Patched domain-containing protein 3-like protein.	ML domain-containing protein.	0.900
D2A0E5_TRICA	A0A139WDS2	D2A0E5	A0A139WDS2	Protein NPC2 homolog-like Protein.	Niemann-Pick C1 protein-like Protein.	0.962