D6WHU5_TRICA protein (Tribolium castaneum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

D6WHU5_TRICA

Nucleobindin-2-like Protein. (553 aa)

Predicted Functional Partners:

D6WAU5_TRICA

0.691

D6WA43_TRICA

0.530

D6X567_TRICA

0.509

D6WT38_TRICA

0.508

D2A169_TRICA

0.501

A0A139WC40

0.445

Ptth

0.439

D6WVZ4_TRICA

0.434

Your Current Organism:

Tribolium castaneum

NCBI taxonomy Id: 7070
Other names: T. castaneum, red flour beetle, rust-red flour beetle

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A139WC40	D6WHU5_TRICA	A0A139WC40	D6WHU5	UDENN domain-containing protein.	Nucleobindin-2-like Protein.	0.445
D2A169_TRICA	D6WA43_TRICA	D2A169	D6WA43	Calumenin-like Protein.	Membrane-bound transcription factor site-2 protease-like Protein.	0.400
D2A169_TRICA	D6WHU5_TRICA	D2A169	D6WHU5	Calumenin-like Protein.	Nucleobindin-2-like Protein.	0.501
D2A169_TRICA	D6WT38_TRICA	D2A169	D6WT38	Calumenin-like Protein.	Ubiquitin-like domain-containing protein.	0.400
D6WA43_TRICA	D2A169_TRICA	D6WA43	D2A169	Membrane-bound transcription factor site-2 protease-like Protein.	Calumenin-like Protein.	0.400
D6WA43_TRICA	D6WHU5_TRICA	D6WA43	D6WHU5	Membrane-bound transcription factor site-2 protease-like Protein.	Nucleobindin-2-like Protein.	0.530
D6WA43_TRICA	D6WT38_TRICA	D6WA43	D6WT38	Membrane-bound transcription factor site-2 protease-like Protein.	Ubiquitin-like domain-containing protein.	0.542
D6WAU5_TRICA	D6WHU5_TRICA	D6WAU5	D6WHU5	Small integral membrane protein 20-like Protein.	Nucleobindin-2-like Protein.	0.691
D6WAU5_TRICA	D6X567_TRICA	D6WAU5	D6X567	Small integral membrane protein 20-like Protein.	Arrestin_C domain-containing protein.	0.450
D6WHU5_TRICA	A0A139WC40	D6WHU5	A0A139WC40	Nucleobindin-2-like Protein.	UDENN domain-containing protein.	0.445
D6WHU5_TRICA	D2A169_TRICA	D6WHU5	D2A169	Nucleobindin-2-like Protein.	Calumenin-like Protein.	0.501
D6WHU5_TRICA	D6WA43_TRICA	D6WHU5	D6WA43	Nucleobindin-2-like Protein.	Membrane-bound transcription factor site-2 protease-like Protein.	0.530
D6WHU5_TRICA	D6WAU5_TRICA	D6WHU5	D6WAU5	Nucleobindin-2-like Protein.	Small integral membrane protein 20-like Protein.	0.691
D6WHU5_TRICA	D6WT38_TRICA	D6WHU5	D6WT38	Nucleobindin-2-like Protein.	Ubiquitin-like domain-containing protein.	0.508
D6WHU5_TRICA	D6WVZ4_TRICA	D6WHU5	D6WVZ4	Nucleobindin-2-like Protein.	Cytochrome c-2-like Protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.	0.434
D6WHU5_TRICA	D6X567_TRICA	D6WHU5	D6X567	Nucleobindin-2-like Protein.	Arrestin_C domain-containing protein.	0.509
D6WHU5_TRICA	Ptth	D6WHU5	D6W8M4	Nucleobindin-2-like Protein.	Prothoracicotropic hormone.	0.439
D6WT38_TRICA	D2A169_TRICA	D6WT38	D2A169	Ubiquitin-like domain-containing protein.	Calumenin-like Protein.	0.400
D6WT38_TRICA	D6WA43_TRICA	D6WT38	D6WA43	Ubiquitin-like domain-containing protein.	Membrane-bound transcription factor site-2 protease-like Protein.	0.542
D6WT38_TRICA	D6WHU5_TRICA	D6WT38	D6WHU5	Ubiquitin-like domain-containing protein.	Nucleobindin-2-like Protein.	0.508