STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCU68_33500Unannotated protein; Belongs to the DapA family. (305 aa)    
Predicted Functional Partners:
dapB
Unannotated protein; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
 
 
 0.916
CCU68_33545
Unannotated protein.
 
  
  0.837
CCU68_33495
Unannotated protein.
 
 
 0.814
CCU68_31090
Unannotated protein; Belongs to the aspartate-semialdehyde dehydrogenase family.
  
 
 0.813
asd
Unannotated protein; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.
  
 
 0.813
CCU68_34020
Unannotated protein.
 
  
 0.810
CCU68_07520
Unannotated protein.
  
 
 0.801
CCU68_33540
Unannotated protein.
 
  
  0.767
CCU68_33555
Unannotated protein; Belongs to the proline racemase family.
 
  
 0.766
CCU68_11460
Unannotated protein.
 
 
 0.741
Your Current Organism:
Pseudomonas gingeri
NCBI taxonomy Id: 707248
Other names: P. gingeri NCPPB 3146 = LMG 5327, Pseudomonas gingeri CFBP 2810, Pseudomonas gingeri LMG 5327, Pseudomonas gingeri LMG 5327 = NCPPB 3146, Pseudomonas gingeri NCPPB 3146, Pseudomonas gingeri NCPPB 3146 = LMG 5327
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.